| TF name | Position | PWM scan score |
| ArcA | 322-382 | 37.130 |
| CysB | 344-385 | 27.292 |
| MetR | 78-101 | 21.479 |
| OmpR | 357-376 | 20.527 |
| GadE | 359-378 | 20.102 |
| OxyR | 12-56 | 19.729 |
| CytR | 358-397 | 18.756 |
| H-NS | 358-372 | 17.446 |
| AgaR | 349-372 | 16.853 |
| DcuR | 331-385 | 16.517 |
| FNR | 77-98 | 15.676 |
| GcvA | 353-381 | 15.090 |
| IHF | 83-95 | 15.000 |
| CpxR | 356-370 | 14.653 |
| CRP | 20-41 | 14.535 |
| NagC | 69-91 | 14.486 |
| Mlc | 31-53 | 14.360 |
| TyrR | 355-376 | 14.272 |
| PhoB | 147-166 | 13.800 |
| RcsB | 208-221 | 13.753 |
| Ada | 346-373 | 13.594 |
| Rob | 356-376 | 13.333 |
| GlpR | 72-91 | 13.304 |
| Fis | 350-370 | 13.186 |
| Fur | 201-215 | 13.172 |
| NorR | 10-26 | 13.156 |
| PhoP | 365-381 | 13.032 |
| XylR | 355-372 | 12.803 |
| PspF | 230-246 | 12.656 |
| DeoR | 344-359 | 12.473 |
| UlaR | 347-366 | 12.472 |
| AraC | 353-370 | 12.092 |
| Lrp | 355-366 | 11.838 |
| FruR | 197-214 | 11.376 |
| ArgP | 30-42 | 11.357 |
| UxuR | 349-366 | 11.173 |
| MarA | 352-372 | 10.990 |
| Nac | 357-371 | 10.980 |
| SoxS | 77-94 | 10.844 |
| ModE | 41-67 | 10.748 |
| TorR | 29-38 | 10.649 |
| ArgR | 177-192 | 10.469 |
| FhlA | 162-201 | 9.242 |
| DnaA | 82-90 | 8.977 |
| LacI | 70-90 | 8.893 |
| GalS | 196-211 | 8.566 |
| GalR | 196-211 | 8.566 |
| NarP | 26-32 | 8.306 |
| FadR | 144-160 | 8.151 |
| NarL | 271-277 | 7.748 |
| LexA | 280-299 | 7.734 |
| IdnR | 19-34 | 7.706 |
| RhaS | 243-259 | 6.242 |
| PurR | 84-99 | 6.043 |
| NtrC | 301-317 | 6.001 |
| GntR | 11-30 | 5.682 |
| MetJ | 376-383 | 5.623 |
| MelR | 351-368 | 5.298 |
| MalT | 169-178 | 5.139 |
| CaiF | 65-109 | 5.102 |