| TF name | Position | PWM scan score |
| ArcA | 249-309 | 35.965 |
| OmpR | 275-294 | 21.127 |
| CysB | 343-384 | 21.019 |
| GadE | 276-295 | 20.374 |
| OxyR | 270-314 | 19.448 |
| DcuR | 283-337 | 18.588 |
| AraC | 25-42 | 16.796 |
| Fis | 34-54 | 16.770 |
| Fur | 321-335 | 16.340 |
| AgaR | 327-350 | 16.201 |
| Ada | 318-345 | 15.951 |
| GcvA | 129-157 | 15.798 |
| PhoB | 276-295 | 15.597 |
| UlaR | 239-258 | 14.930 |
| Rob | 273-293 | 14.651 |
| MarA | 312-332 | 14.389 |
| CRP | 289-310 | 14.191 |
| DeoR | 37-52 | 14.138 |
| PhoP | 271-287 | 14.017 |
| FhlA | 257-296 | 13.948 |
| Nac | 297-311 | 13.576 |
| NagC | 292-314 | 13.426 |
| H-NS | 287-301 | 13.343 |
| CytR | 285-324 | 13.307 |
| CpxR | 272-286 | 13.237 |
| SoxS | 321-338 | 13.080 |
| FNR | 233-254 | 12.989 |
| RcsB | 172-185 | 12.912 |
| IHF | 281-293 | 12.528 |
| TyrR | 281-302 | 12.314 |
| PspF | 30-46 | 12.139 |
| Mlc | 290-312 | 12.088 |
| XylR | 282-299 | 11.361 |
| GntR | 228-247 | 11.105 |
| MetR | 234-257 | 11.080 |
| FadR | 226-242 | 11.023 |
| IdnR | 34-49 | 10.936 |
| ArgR | 285-300 | 10.846 |
| Lrp | 286-297 | 10.762 |
| GlpR | 272-291 | 10.396 |
| DnaA | 291-299 | 9.821 |
| MelR | 372-389 | 9.766 |
| ArgP | 361-373 | 9.302 |
| NtrC | 28-44 | 8.953 |
| ModE | 88-114 | 8.781 |
| UxuR | 243-260 | 8.396 |
| NarL | 272-278 | 8.131 |
| FruR | 351-368 | 7.792 |
| LexA | 356-375 | 7.758 |
| MetJ | 325-332 | 7.412 |
| PurR | 376-391 | 6.459 |
| RhaS | 99-115 | 6.253 |
| NarP | 366-372 | 6.195 |
| MalT | 262-271 | 6.069 |
| NorR | 245-261 | 6.021 |
| TorR | 58-67 | 5.908 |