| TF name | Position | PWM scan score |
| ArcA | 255-315 | 26.163 |
| CysB | 36-77 | 21.019 |
| GlpR | 251-270 | 18.841 |
| GcvA | 245-273 | 18.032 |
| OxyR | 120-164 | 16.846 |
| Fur | 306-320 | 16.739 |
| CytR | 237-276 | 16.258 |
| AgaR | 20-43 | 16.201 |
| Ada | 11-38 | 15.951 |
| NorR | 320-336 | 15.758 |
| H-NS | 279-293 | 14.570 |
| PhoB | 241-260 | 14.566 |
| GntR | 380-399 | 14.537 |
| OmpR | 281-300 | 14.408 |
| MarA | 5-25 | 14.389 |
| Fis | 218-238 | 13.979 |
| FNR | 354-375 | 13.816 |
| Rob | 277-297 | 13.140 |
| SoxS | 14-31 | 13.080 |
| RcsB | 125-138 | 12.930 |
| GadE | 216-235 | 12.880 |
| DcuR | 172-226 | 12.823 |
| UlaR | 179-198 | 12.678 |
| NagC | 56-78 | 12.475 |
| DeoR | 307-322 | 12.429 |
| CRP | 303-324 | 12.123 |
| PhoP | 60-76 | 11.947 |
| XylR | 151-168 | 11.848 |
| ArgP | 353-365 | 11.754 |
| IHF | 307-319 | 11.600 |
| FruR | 134-151 | 11.401 |
| AraC | 138-155 | 10.933 |
| MelR | 65-82 | 9.766 |
| CpxR | 134-148 | 9.711 |
| Lrp | 17-28 | 9.698 |
| ArgR | 307-322 | 9.672 |
| TyrR | 305-326 | 9.649 |
| Nac | 299-313 | 9.606 |
| TorR | 254-263 | 9.284 |
| ModE | 147-173 | 9.269 |
| MetR | 12-35 | 9.230 |
| NarL | 314-320 | 9.197 |
| UxuR | 371-388 | 8.490 |
| PspF | 312-328 | 8.392 |
| IdnR | 13-28 | 8.223 |
| LexA | 156-175 | 7.974 |
| Mlc | 154-176 | 7.811 |
| FhlA | 155-194 | 7.809 |
| DnaA | 195-203 | 7.652 |
| MetJ | 18-25 | 7.412 |
| GalR | 307-322 | 6.934 |
| GalS | 307-322 | 6.934 |
| FadR | 224-240 | 6.856 |
| PurR | 69-84 | 6.459 |
| NarP | 59-65 | 6.195 |
| NtrC | 364-380 | 6.045 |
| LacI | 74-94 | 5.656 |
| RhaS | 252-268 | 5.167 |