| TF name | Position | PWM scan score |
| ArcA | 37-97 | 32.315 |
| CytR | 127-166 | 25.166 |
| CysB | 76-117 | 22.431 |
| OmpR | 136-155 | 19.559 |
| FNR | 136-157 | 18.877 |
| NagC | 89-111 | 18.743 |
| GadE | 145-164 | 18.421 |
| MetR | 194-217 | 17.026 |
| CpxR | 143-157 | 16.628 |
| OxyR | 119-163 | 16.203 |
| CaiF | 36-80 | 15.606 |
| Mlc | 272-294 | 14.522 |
| Ada | 202-229 | 14.514 |
| IHF | 163-175 | 14.420 |
| H-NS | 144-158 | 14.415 |
| CRP | 133-154 | 14.332 |
| AgaR | 123-146 | 14.330 |
| AraC | 64-81 | 14.214 |
| UlaR | 159-178 | 13.312 |
| Nac | 4-18 | 13.163 |
| FhlA | 1-40 | 13.046 |
| Lrp | 211-222 | 12.990 |
| Fis | 52-72 | 12.941 |
| PhoP | 2-18 | 12.841 |
| Fur | 40-54 | 12.356 |
| GlpR | 219-238 | 11.932 |
| GntR | 187-206 | 11.929 |
| DeoR | 142-157 | 11.910 |
| ArgP | 223-235 | 11.667 |
| Rob | 142-162 | 11.590 |
| SoxS | 232-249 | 11.189 |
| GcvA | 299-327 | 10.953 |
| ArgR | 32-47 | 10.931 |
| RcsB | 161-174 | 10.704 |
| MelR | 263-280 | 10.416 |
| PurR | 66-81 | 10.351 |
| DcuR | 77-131 | 10.094 |
| PhoB | 372-391 | 10.025 |
| PspF | 103-119 | 9.809 |
| XylR | 83-100 | 9.779 |
| ModE | 141-167 | 9.772 |
| TyrR | 140-161 | 9.588 |
| NarL | 42-48 | 8.932 |
| MetJ | 304-311 | 8.430 |
| DnaA | 260-268 | 8.349 |
| GalR | 56-71 | 8.268 |
| GalS | 56-71 | 8.268 |
| MarA | 140-160 | 8.159 |
| TorR | 387-396 | 8.078 |
| LexA | 5-24 | 8.065 |
| NorR | 207-223 | 7.979 |
| LacI | 167-187 | 7.355 |
| UxuR | 138-155 | 7.154 |
| NarP | 40-46 | 6.794 |
| MalT | 184-193 | 6.268 |
| IdnR | 147-162 | 5.903 |