| TF name | Position | PWM scan score |
| ArcA | 338-398 | 24.006 |
| OxyR | 232-276 | 16.593 |
| CysB | 349-390 | 16.099 |
| Fur | 344-358 | 15.539 |
| IHF | 250-262 | 14.870 |
| PhoP | 308-324 | 13.932 |
| ArgR | 61-76 | 12.718 |
| Fis | 304-324 | 12.652 |
| MarA | 264-284 | 12.507 |
| GcvA | 246-274 | 12.388 |
| OmpR | 251-270 | 12.286 |
| GadE | 378-397 | 12.158 |
| ArgP | 60-72 | 12.066 |
| NagC | 375-397 | 11.769 |
| RcsB | 348-361 | 11.554 |
| DnaA | 309-317 | 11.552 |
| GntR | 12-31 | 11.051 |
| FNR | 250-271 | 10.811 |
| Rob | 370-390 | 10.784 |
| CRP | 253-274 | 10.738 |
| AraC | 296-313 | 10.672 |
| H-NS | 313-327 | 10.551 |
| Lrp | 289-300 | 10.469 |
| PhoB | 29-48 | 10.063 |
| TorR | 375-384 | 9.785 |
| XylR | 248-265 | 9.527 |
| DeoR | 111-126 | 9.470 |
| NarL | 377-383 | 9.376 |
| UxuR | 337-354 | 9.222 |
| ModE | 339-365 | 9.044 |
| PspF | 30-46 | 8.919 |
| CytR | 352-391 | 8.836 |
| NtrC | 241-257 | 8.703 |
| MetJ | 176-183 | 8.296 |
| CpxR | 44-58 | 8.167 |
| SoxS | 114-131 | 8.101 |
| Nac | 354-368 | 8.095 |
| FadR | 321-337 | 8.058 |
| FruR | 299-316 | 8.034 |
| GalS | 251-266 | 7.928 |
| GalR | 251-266 | 7.928 |
| GlpR | 224-243 | 7.807 |
| MetR | 119-142 | 7.748 |
| NarP | 172-178 | 7.347 |
| UlaR | 295-314 | 7.051 |
| LacI | 355-375 | 6.425 |
| FhlA | 252-291 | 6.148 |
| AgaR | 243-266 | 6.064 |
| LexA | 274-293 | 5.971 |
| MelR | 23-40 | 5.786 |
| MalT | 199-208 | 5.699 |
| Ada | 321-348 | 5.438 |
| DcuR | 241-295 | 5.272 |
| IdnR | 205-220 | 5.134 |