| TF name | Position | PWM scan score |
| ArcA | 38-98 | 25.783 |
| CytR | 142-181 | 21.892 |
| OmpR | 2-21 | 18.352 |
| SoxS | 70-87 | 17.967 |
| Mlc | 223-245 | 16.994 |
| CysB | 166-207 | 16.512 |
| PhoB | 214-233 | 16.113 |
| IHF | 349-361 | 15.638 |
| FNR | 53-74 | 14.888 |
| GlpR | 30-49 | 14.779 |
| H-NS | 1-15 | 14.779 |
| ArgP | 1-13 | 14.625 |
| Fur | 368-382 | 14.243 |
| PhoP | 372-388 | 14.206 |
| UlaR | 53-72 | 13.428 |
| RcsB | 54-67 | 13.368 |
| AgaR | 40-63 | 13.260 |
| GcvA | 367-395 | 13.199 |
| UxuR | 354-371 | 13.053 |
| GadE | 179-198 | 12.992 |
| Ada | 35-62 | 12.852 |
| MarA | 369-389 | 12.648 |
| GntR | 224-243 | 12.216 |
| Fis | 185-205 | 11.933 |
| MetR | 338-361 | 11.874 |
| IdnR | 219-234 | 11.802 |
| TorR | 56-65 | 11.575 |
| AraC | 188-205 | 11.550 |
| Nac | 154-168 | 11.360 |
| RhaS | 326-342 | 11.185 |
| FruR | 210-227 | 10.980 |
| Lrp | 191-202 | 10.960 |
| CRP | 38-59 | 10.943 |
| NagC | 27-49 | 10.830 |
| DeoR | 278-293 | 10.698 |
| NarL | 379-385 | 10.377 |
| PspF | 181-197 | 10.336 |
| DcuR | 163-217 | 10.211 |
| ModE | 293-319 | 9.903 |
| MelR | 231-248 | 9.687 |
| NarP | 320-326 | 9.680 |
| TyrR | 57-78 | 9.566 |
| ArgR | 345-360 | 9.539 |
| LacI | 227-247 | 9.363 |
| CpxR | 383-397 | 9.330 |
| OxyR | 43-87 | 8.856 |
| DnaA | 359-367 | 8.280 |
| XylR | 175-192 | 8.172 |
| Rob | 225-245 | 7.315 |
| MetJ | 131-138 | 7.270 |
| GalS | 270-285 | 6.337 |
| GalR | 270-285 | 6.337 |
| PurR | 270-285 | 6.255 |
| NtrC | 47-63 | 5.896 |
| NorR | 370-386 | 5.491 |
| TrpR | 38-55 | 5.382 |
| FadR | 117-133 | 5.318 |
| LexA | 59-78 | 5.232 |
| MalT | 310-319 | 5.019 |