| TF name | Position | PWM scan score |
| MetR | 162-185 | 16.721 |
| CysB | 39-80 | 15.710 |
| ArcA | 108-168 | 14.780 |
| AraC | 336-353 | 13.439 |
| Mlc | 261-283 | 12.686 |
| FNR | 182-203 | 12.672 |
| Fis | 311-331 | 11.228 |
| PurR | 116-131 | 11.152 |
| Lrp | 388-399 | 10.861 |
| MarA | 373-393 | 10.715 |
| Ada | 246-273 | 10.703 |
| IdnR | 312-327 | 10.570 |
| DnaA | 58-66 | 10.550 |
| NagC | 158-180 | 10.480 |
| Fur | 182-196 | 10.419 |
| UxuR | 322-339 | 10.209 |
| H-NS | 383-397 | 9.717 |
| NorR | 10-26 | 9.681 |
| CRP | 179-200 | 9.550 |
| GlpR | 311-330 | 9.504 |
| NarL | 390-396 | 9.376 |
| IHF | 385-397 | 9.281 |
| GalR | 116-131 | 9.248 |
| GalS | 116-131 | 9.248 |
| NtrC | 234-250 | 8.693 |
| ArgP | 387-399 | 8.468 |
| SoxS | 382-399 | 8.439 |
| LacI | 247-267 | 8.406 |
| ArgR | 170-185 | 8.348 |
| ModE | 249-275 | 8.313 |
| Nac | 280-294 | 8.270 |
| MalT | 182-191 | 8.109 |
| MetJ | 75-82 | 8.047 |
| AgaR | 171-194 | 7.980 |
| OmpR | 118-137 | 7.918 |
| PhoP | 39-55 | 7.918 |
| TorR | 102-111 | 7.850 |
| GadE | 10-29 | 7.770 |
| CytR | 318-357 | 7.649 |
| LexA | 183-202 | 7.587 |
| PhoB | 255-274 | 7.425 |
| DeoR | 264-279 | 7.416 |
| MelR | 269-286 | 7.388 |
| TyrR | 5-26 | 7.283 |
| UlaR | 14-33 | 6.996 |
| RcsB | 121-134 | 6.935 |
| Rob | 379-399 | 6.919 |
| RhaS | 195-211 | 6.460 |
| FadR | 288-304 | 6.414 |
| NarP | 342-348 | 6.176 |
| OxyR | 306-350 | 5.731 |
| PspF | 108-124 | 5.706 |
| CpxR | 126-140 | 5.595 |
| XylR | 382-399 | 5.124 |