| TF name | Position | PWM scan score |
| Rob | 183-203 | 21.316 |
| Mlc | 66-88 | 20.046 |
| CysB | 65-106 | 18.095 |
| ArcA | 48-108 | 17.374 |
| GadE | 59-78 | 13.479 |
| AraC | 12-29 | 13.439 |
| GcvA | 59-87 | 12.952 |
| Nac | 63-77 | 12.835 |
| ArgR | 63-78 | 12.747 |
| FNR | 171-192 | 12.642 |
| H-NS | 72-86 | 12.148 |
| CytR | 259-298 | 11.884 |
| DeoR | 173-188 | 11.699 |
| Lrp | 291-302 | 11.393 |
| OmpR | 59-78 | 11.175 |
| AgaR | 258-281 | 11.038 |
| MarA | 49-69 | 10.715 |
| NorR | 276-292 | 10.470 |
| IHF | 256-268 | 10.409 |
| MelR | 72-89 | 10.168 |
| NagC | 51-73 | 10.135 |
| XylR | 195-212 | 9.949 |
| TyrR | 293-314 | 9.887 |
| RhaS | 199-215 | 9.619 |
| LacI | 261-281 | 9.457 |
| NarL | 66-72 | 9.376 |
| Fis | 9-29 | 9.354 |
| CpxR | 62-76 | 9.266 |
| PhoB | 72-91 | 9.088 |
| OxyR | 179-223 | 9.007 |
| TorR | 304-313 | 8.957 |
| Fur | 9-23 | 8.907 |
| DnaA | 173-181 | 8.703 |
| RcsB | 290-303 | 8.682 |
| SoxS | 165-182 | 8.595 |
| ArgP | 63-75 | 8.468 |
| UlaR | 98-117 | 8.443 |
| PhoP | 333-349 | 8.273 |
| MetR | 194-217 | 8.249 |
| IdnR | 101-116 | 8.159 |
| CRP | 293-314 | 7.956 |
| FruR | 253-270 | 7.880 |
| FadR | 235-251 | 7.426 |
| ModE | 174-200 | 7.048 |
| UxuR | 282-299 | 6.976 |
| PurR | 320-335 | 6.837 |
| GntR | 106-125 | 6.239 |
| NarP | 332-338 | 6.195 |
| LexA | 21-40 | 6.145 |
| PspF | 61-77 | 5.874 |
| NtrC | 159-175 | 5.532 |
| GlpR | 66-85 | 5.500 |
| FhlA | 47-86 | 5.104 |