| TF name | Position | PWM scan score |
| ArcA | 222-282 | 23.086 |
| OmpR | 182-201 | 18.368 |
| ModE | 185-211 | 17.905 |
| DcuR | 323-377 | 17.648 |
| Nac | 384-398 | 14.972 |
| CysB | 217-258 | 14.826 |
| GcvA | 191-219 | 14.180 |
| NagC | 171-193 | 14.162 |
| ArgR | 188-203 | 14.135 |
| MelR | 191-208 | 13.754 |
| H-NS | 184-198 | 13.717 |
| Fis | 185-205 | 13.651 |
| XylR | 326-343 | 12.560 |
| RcsB | 331-344 | 12.266 |
| IHF | 192-204 | 12.155 |
| LexA | 186-205 | 12.117 |
| DeoR | 355-370 | 12.069 |
| CytR | 45-84 | 11.884 |
| Rob | 347-367 | 11.808 |
| GadE | 173-192 | 11.587 |
| Lrp | 77-88 | 11.393 |
| PhoP | 190-206 | 11.352 |
| GlpR | 193-212 | 11.286 |
| Mlc | 261-283 | 11.177 |
| UlaR | 234-253 | 11.109 |
| AgaR | 44-67 | 11.038 |
| FNR | 33-54 | 10.864 |
| MarA | 177-197 | 10.804 |
| PurR | 328-343 | 10.744 |
| NorR | 62-78 | 10.470 |
| AraC | 186-203 | 10.100 |
| DnaA | 338-346 | 9.922 |
| SoxS | 287-304 | 9.900 |
| TyrR | 79-100 | 9.887 |
| CpxR | 384-398 | 9.783 |
| CRP | 231-252 | 9.657 |
| ArgP | 199-211 | 9.545 |
| LacI | 47-67 | 9.457 |
| NarP | 350-356 | 9.455 |
| TorR | 90-99 | 8.957 |
| MetR | 245-268 | 8.567 |
| OxyR | 204-248 | 8.527 |
| NarL | 187-193 | 8.481 |
| PhoB | 239-258 | 8.393 |
| FruR | 235-252 | 8.231 |
| UxuR | 236-253 | 8.057 |
| FhlA | 166-205 | 7.937 |
| Fur | 105-119 | 7.696 |
| GntR | 198-217 | 7.492 |
| FadR | 21-37 | 7.426 |
| GalS | 180-195 | 6.128 |
| GalR | 180-195 | 6.128 |