| TF name | Position | PWM scan score |
| ArcA | 152-212 | 24.718 |
| CytR | 194-233 | 14.814 |
| FNR | 179-200 | 14.420 |
| ArgP | 190-202 | 13.809 |
| PhoB | 25-44 | 13.695 |
| Lrp | 165-176 | 13.207 |
| CpxR | 377-391 | 12.804 |
| CueR | 27-45 | 12.144 |
| IHF | 298-310 | 12.011 |
| AraC | 246-263 | 12.000 |
| PhoP | 83-99 | 11.824 |
| CysB | 152-193 | 11.807 |
| OmpR | 163-182 | 11.635 |
| MelR | 287-304 | 11.526 |
| TorR | 171-180 | 10.903 |
| OxyR | 289-333 | 10.817 |
| CRP | 90-111 | 10.793 |
| Fis | 180-200 | 10.611 |
| RcsB | 175-188 | 10.591 |
| Fur | 287-301 | 10.384 |
| UlaR | 165-184 | 10.253 |
| MarA | 234-254 | 10.186 |
| TyrR | 366-387 | 9.958 |
| FhlA | 71-110 | 9.923 |
| H-NS | 197-211 | 9.891 |
| GlpR | 34-53 | 9.833 |
| DnaA | 170-178 | 9.795 |
| MetJ | 159-166 | 9.765 |
| XylR | 157-174 | 9.657 |
| Nac | 109-123 | 9.652 |
| DeoR | 378-393 | 9.577 |
| Rob | 290-310 | 9.351 |
| SoxS | 30-47 | 9.311 |
| DcuR | 344-398 | 9.264 |
| PspF | 165-181 | 9.003 |
| NarL | 37-43 | 8.932 |
| MetR | 181-204 | 8.932 |
| ModE | 369-395 | 8.743 |
| NagC | 252-274 | 8.705 |
| Ada | 156-183 | 8.635 |
| Mlc | 251-273 | 8.602 |
| GntR | 174-193 | 8.537 |
| NorR | 283-299 | 8.415 |
| AgaR | 47-70 | 8.263 |
| GalR | 307-322 | 7.980 |
| GalS | 307-322 | 7.980 |
| NtrC | 241-257 | 7.025 |
| GadE | 76-95 | 7.007 |
| ArgR | 38-53 | 6.616 |
| LexA | 153-172 | 6.211 |
| UxuR | 372-389 | 6.076 |
| GcvA | 191-219 | 5.827 |
| TrpR | 248-265 | 5.608 |
| NarP | 99-105 | 5.349 |
| RhaS | 183-199 | 5.232 |