| TF name | Position | PWM scan score |
| ArcA | 295-355 | 16.123 |
| Nac | 147-161 | 16.040 |
| XylR | 290-307 | 15.967 |
| FNR | 146-167 | 14.924 |
| PhoP | 287-303 | 14.605 |
| OmpR | 283-302 | 14.603 |
| CpxR | 154-168 | 13.562 |
| AraC | 32-49 | 12.931 |
| MetR | 147-170 | 12.697 |
| H-NS | 283-297 | 12.475 |
| UlaR | 119-138 | 12.435 |
| GadE | 377-396 | 12.034 |
| ArgP | 150-162 | 11.600 |
| NorR | 40-56 | 11.031 |
| DnaA | 154-162 | 10.798 |
| RcsB | 292-305 | 10.290 |
| CytR | 360-399 | 10.126 |
| Fis | 367-387 | 10.089 |
| Lrp | 35-46 | 10.007 |
| MetJ | 134-141 | 9.980 |
| CysB | 255-296 | 9.968 |
| CRP | 295-316 | 9.637 |
| IHF | 288-300 | 9.424 |
| Rob | 146-166 | 9.292 |
| ModE | 316-342 | 9.208 |
| PspF | 32-48 | 9.003 |
| OxyR | 224-268 | 8.904 |
| DeoR | 371-386 | 8.897 |
| UxuR | 10-27 | 8.708 |
| NarL | 55-61 | 8.685 |
| RhaS | 173-189 | 8.643 |
| AgaR | 364-387 | 8.491 |
| PhoB | 250-269 | 8.486 |
| Mlc | 37-59 | 8.140 |
| Ada | 348-375 | 7.849 |
| TorR | 285-294 | 7.603 |
| ArgR | 148-163 | 7.601 |
| TyrR | 244-265 | 7.569 |
| MarA | 173-193 | 7.504 |
| NagC | 371-393 | 7.116 |
| GcvA | 252-280 | 7.063 |
| SoxS | 280-297 | 7.001 |
| FadR | 3-19 | 6.732 |
| IdnR | 165-180 | 6.618 |
| Fur | 173-187 | 6.569 |
| GlpR | 154-173 | 6.440 |
| LacI | 22-42 | 6.395 |
| GntR | 233-252 | 6.384 |
| GalR | 246-261 | 5.980 |
| GalS | 246-261 | 5.980 |
| FruR | 290-307 | 5.792 |
| NtrC | 362-378 | 5.665 |
| NarP | 348-354 | 5.283 |