| TF name | Position | PWM scan score |
| ArcA | 325-385 | 34.331 |
| CysB | 300-341 | 28.205 |
| CytR | 314-353 | 25.493 |
| FNR | 257-278 | 21.235 |
| OxyR | 253-297 | 20.192 |
| GcvA | 260-288 | 19.425 |
| Ada | 254-281 | 19.396 |
| Fur | 261-275 | 19.077 |
| UlaR | 263-282 | 18.971 |
| NagC | 257-279 | 18.925 |
| OmpR | 253-272 | 18.530 |
| Mlc | 250-272 | 18.152 |
| Rob | 251-271 | 16.659 |
| DcuR | 306-360 | 16.483 |
| RcsB | 267-280 | 16.141 |
| DeoR | 352-367 | 15.862 |
| AgaR | 250-273 | 15.504 |
| PhoP | 82-98 | 15.330 |
| TyrR | 342-363 | 15.252 |
| IHF | 137-149 | 14.915 |
| MetR | 314-337 | 14.903 |
| Nac | 259-273 | 14.576 |
| GlpR | 328-347 | 14.520 |
| ArgR | 356-371 | 14.090 |
| H-NS | 336-350 | 13.961 |
| CRP | 254-275 | 13.838 |
| UxuR | 178-195 | 13.785 |
| GadE | 97-116 | 13.425 |
| Fis | 326-346 | 13.320 |
| MarA | 344-364 | 13.120 |
| NorR | 91-107 | 12.911 |
| Lrp | 260-271 | 12.098 |
| DnaA | 136-144 | 11.958 |
| PspF | 382-398 | 11.941 |
| TorR | 260-269 | 11.647 |
| PhoB | 325-344 | 11.643 |
| ArgP | 256-268 | 11.548 |
| FruR | 374-391 | 11.466 |
| AraC | 261-278 | 11.123 |
| ModE | 353-379 | 10.703 |
| NarP | 15-21 | 10.626 |
| SoxS | 376-393 | 9.614 |
| NarL | 259-265 | 9.580 |
| CpxR | 321-335 | 9.454 |
| XylR | 2-19 | 8.930 |
| GntR | 75-94 | 8.852 |
| RhaS | 69-85 | 8.624 |
| GalR | 79-94 | 8.365 |
| GalS | 79-94 | 8.365 |
| LacI | 378-398 | 6.724 |
| FhlA | 171-210 | 6.559 |
| LexA | 79-98 | 6.539 |
| MalT | 40-49 | 6.274 |
| IdnR | 23-38 | 6.101 |
| MetJ | 210-217 | 5.927 |
| CueR | 195-213 | 5.832 |
| NtrC | 248-264 | 5.828 |