| TF name | Position | PWM scan score |
| CpxR | 45-59 | 14.606 |
| NagC | 1-23 | 12.462 |
| PhoP | 350-366 | 11.912 |
| FNR | 333-354 | 11.883 |
| OmpR | 329-348 | 11.598 |
| MetR | 227-250 | 11.323 |
| ArcA | 333-393 | 11.265 |
| H-NS | 147-161 | 11.255 |
| PurR | 35-50 | 10.755 |
| IHF | 345-357 | 10.373 |
| GlpR | 147-166 | 10.283 |
| CRP | 331-352 | 10.177 |
| NorR | 248-264 | 9.926 |
| GntR | 235-254 | 9.597 |
| DeoR | 256-271 | 9.473 |
| IdnR | 13-28 | 9.331 |
| TorR | 42-51 | 9.091 |
| GcvA | 68-96 | 8.895 |
| Fis | 251-271 | 8.844 |
| NarL | 152-158 | 8.681 |
| FadR | 46-62 | 8.514 |
| NarP | 244-250 | 8.496 |
| PhoB | 341-360 | 8.374 |
| PspF | 246-262 | 7.831 |
| TyrR | 33-54 | 7.830 |
| UxuR | 151-168 | 7.792 |
| SoxS | 223-240 | 7.689 |
| MarA | 80-100 | 7.590 |
| DcuR | 119-173 | 7.263 |
| Nac | 71-85 | 7.214 |
| MalT | 297-306 | 7.131 |
| GalS | 35-50 | 6.889 |
| GalR | 35-50 | 6.889 |
| RhaS | 199-215 | 6.785 |
| MetJ | 118-125 | 6.600 |
| AraC | 250-267 | 6.588 |
| UlaR | 346-365 | 6.545 |
| Rob | 216-236 | 6.130 |
| XylR | 6-23 | 6.128 |
| RcsB | 262-275 | 6.007 |
| Lrp | 148-159 | 5.922 |
| ModE | 229-255 | 5.612 |
| Mlc | 129-151 | 5.567 |
| GadE | 333-352 | 5.558 |
| NtrC | 144-160 | 5.520 |
| LacI | 133-153 | 5.250 |
| TrpR | 242-259 | 5.173 |
| ArgP | 102-114 | 5.105 |