| TF name | Position | PWM scan score |
| ArcA | 86-146 | 32.917 |
| Fur | 110-124 | 20.497 |
| RcsB | 111-124 | 19.272 |
| DcuR | 97-151 | 19.166 |
| FNR | 110-131 | 19.026 |
| AgaR | 96-119 | 18.437 |
| Fis | 251-271 | 17.591 |
| CysB | 222-263 | 16.712 |
| Ada | 196-223 | 16.592 |
| SoxS | 125-142 | 16.449 |
| Nac | 186-200 | 16.116 |
| CytR | 4-43 | 15.380 |
| H-NS | 259-273 | 14.986 |
| ArgR | 344-359 | 14.764 |
| Rob | 267-287 | 14.505 |
| OmpR | 32-51 | 14.320 |
| Lrp | 113-124 | 13.926 |
| CpxR | 185-199 | 13.797 |
| CRP | 28-49 | 13.673 |
| Mlc | 103-125 | 13.384 |
| PhoP | 184-200 | 13.279 |
| XylR | 224-241 | 13.255 |
| CaiF | 235-279 | 13.138 |
| IHF | 110-122 | 12.965 |
| ArgP | 115-127 | 12.723 |
| UlaR | 89-108 | 12.675 |
| OxyR | 222-266 | 12.194 |
| PspF | 85-101 | 12.149 |
| PhoB | 33-52 | 11.890 |
| ModE | 20-46 | 11.743 |
| FhlA | 103-142 | 11.503 |
| MarA | 25-45 | 11.294 |
| AraC | 292-309 | 10.756 |
| NagC | 331-353 | 10.577 |
| GadE | 256-275 | 10.513 |
| GcvA | 242-270 | 10.403 |
| UxuR | 250-267 | 10.290 |
| MelR | 197-214 | 10.233 |
| FruR | 95-112 | 10.182 |
| GlpR | 270-289 | 9.842 |
| NorR | 97-113 | 9.765 |
| NarL | 118-124 | 9.580 |
| LacI | 229-249 | 8.537 |
| MetR | 216-239 | 8.405 |
| TorR | 106-115 | 7.898 |
| TyrR | 273-294 | 7.883 |
| GntR | 43-62 | 7.879 |
| DeoR | 141-156 | 7.814 |
| RhaS | 358-374 | 7.754 |
| MalT | 80-89 | 7.365 |
| MetJ | 277-284 | 7.297 |
| TrpR | 294-311 | 6.771 |
| IdnR | 36-51 | 6.608 |
| GalS | 353-368 | 6.473 |
| GalR | 353-368 | 6.473 |
| DnaA | 118-126 | 6.339 |
| NarP | 131-137 | 5.408 |
| NtrC | 133-149 | 5.044 |