| TF name | Position | PWM scan score |
| ArcA | 301-361 | 23.158 |
| CysB | 339-380 | 19.904 |
| TyrR | 219-240 | 16.231 |
| GadE | 342-361 | 16.083 |
| CytR | 340-379 | 15.990 |
| OmpR | 332-351 | 15.632 |
| Mlc | 320-342 | 15.296 |
| Fis | 336-356 | 14.655 |
| SoxS | 333-350 | 14.341 |
| DeoR | 63-78 | 13.891 |
| ArgP | 194-206 | 13.820 |
| CRP | 328-349 | 13.802 |
| MarA | 367-387 | 13.604 |
| CpxR | 323-337 | 12.320 |
| MetR | 26-49 | 11.421 |
| GlpR | 59-78 | 11.410 |
| IHF | 339-351 | 11.356 |
| PhoP | 360-376 | 11.276 |
| FNR | 340-361 | 11.017 |
| Nac | 338-352 | 11.008 |
| H-NS | 273-287 | 10.865 |
| Rob | 151-171 | 10.458 |
| Lrp | 339-350 | 10.225 |
| RcsB | 272-285 | 10.214 |
| MetJ | 226-233 | 10.148 |
| MelR | 36-53 | 10.075 |
| NorR | 153-169 | 9.990 |
| TorR | 238-247 | 9.586 |
| IdnR | 219-234 | 9.509 |
| PhoB | 186-205 | 9.325 |
| NarL | 320-326 | 9.197 |
| ModE | 221-247 | 8.886 |
| ArgR | 367-382 | 8.659 |
| Fur | 312-326 | 8.620 |
| GcvA | 333-361 | 8.000 |
| CaiF | 339-383 | 7.773 |
| GalR | 221-236 | 7.772 |
| GalS | 221-236 | 7.772 |
| NagC | 373-395 | 7.676 |
| AgaR | 328-351 | 7.437 |
| DcuR | 192-246 | 7.330 |
| FadR | 234-250 | 7.136 |
| UlaR | 332-351 | 6.669 |
| UxuR | 102-119 | 6.620 |
| Ada | 319-346 | 6.402 |
| FruR | 331-348 | 6.098 |
| LexA | 277-296 | 5.706 |
| GntR | 178-197 | 5.704 |
| PurR | 221-236 | 5.593 |
| OxyR | 221-265 | 5.530 |
| DnaA | 5-13 | 5.288 |
| RhaS | 321-337 | 5.191 |
| MalT | 4-13 | 5.188 |