| TF name | Position | PWM scan score |
| OmpR | 179-198 | 22.637 |
| ArcA | 291-351 | 22.471 |
| CytR | 168-207 | 18.413 |
| CysB | 185-226 | 18.054 |
| Fur | 193-207 | 15.193 |
| NorR | 264-280 | 15.053 |
| CRP | 31-52 | 14.733 |
| PspF | 190-206 | 14.647 |
| NagC | 179-201 | 14.402 |
| AgaR | 191-214 | 14.374 |
| IdnR | 362-377 | 14.327 |
| Mlc | 65-87 | 14.062 |
| Rob | 177-197 | 14.048 |
| PhoB | 171-190 | 13.776 |
| IHF | 328-340 | 13.416 |
| GadE | 324-343 | 13.313 |
| FNR | 177-198 | 12.970 |
| PhoP | 237-253 | 12.933 |
| MarA | 123-143 | 12.781 |
| ArgR | 329-344 | 12.687 |
| UlaR | 40-59 | 12.655 |
| Fis | 247-267 | 12.606 |
| MetJ | 106-113 | 11.820 |
| DnaA | 210-218 | 11.746 |
| GcvA | 252-280 | 11.740 |
| H-NS | 270-284 | 11.733 |
| LexA | 35-54 | 11.722 |
| OxyR | 86-130 | 11.113 |
| TrpR | 294-311 | 10.979 |
| TorR | 174-183 | 10.978 |
| RcsB | 328-341 | 10.820 |
| ArgP | 273-285 | 10.433 |
| XylR | 201-218 | 10.418 |
| NarL | 141-147 | 10.130 |
| SoxS | 125-142 | 9.989 |
| RhaS | 259-275 | 9.973 |
| DeoR | 185-200 | 9.892 |
| Nac | 263-277 | 9.857 |
| GlpR | 194-213 | 9.807 |
| DcuR | 156-210 | 9.758 |
| AraC | 97-114 | 9.697 |
| Lrp | 271-282 | 9.652 |
| CpxR | 2-16 | 9.258 |
| TyrR | 130-151 | 9.228 |
| ModE | 34-60 | 9.196 |
| MetR | 323-346 | 8.819 |
| UxuR | 293-310 | 8.695 |
| Ada | 339-366 | 8.618 |
| MelR | 332-349 | 8.370 |
| GntR | 31-50 | 6.779 |
| FruR | 147-164 | 6.689 |
| NarP | 31-37 | 6.657 |
| NtrC | 368-384 | 6.433 |
| GalS | 337-352 | 6.210 |
| GalR | 337-352 | 6.210 |