| TF name | Position | PWM scan score |
| ArcA | 313-373 | 22.516 |
| CytR | 327-366 | 20.460 |
| Mlc | 296-318 | 18.426 |
| PhoB | 56-75 | 17.406 |
| NagC | 298-320 | 15.885 |
| OmpR | 184-203 | 15.241 |
| CysB | 295-336 | 15.198 |
| Fis | 255-275 | 15.153 |
| ModE | 254-280 | 14.791 |
| MetR | 280-303 | 14.492 |
| FNR | 54-75 | 14.336 |
| AraC | 60-77 | 14.013 |
| Nac | 329-343 | 13.847 |
| PhoP | 256-272 | 13.798 |
| H-NS | 362-376 | 13.760 |
| AgaR | 292-315 | 13.336 |
| GadE | 299-318 | 12.807 |
| TyrR | 296-317 | 12.580 |
| CRP | 339-360 | 12.169 |
| SoxS | 190-207 | 12.029 |
| ArgP | 264-276 | 11.667 |
| IHF | 60-72 | 11.302 |
| GntR | 295-314 | 11.265 |
| UxuR | 2-19 | 11.082 |
| UlaR | 290-309 | 11.031 |
| PspF | 266-282 | 10.712 |
| Lrp | 308-319 | 10.623 |
| ArgR | 355-370 | 10.603 |
| GcvA | 347-375 | 10.547 |
| IdnR | 61-76 | 10.382 |
| MelR | 289-306 | 9.570 |
| MarA | 348-368 | 9.540 |
| RcsB | 184-197 | 9.540 |
| NarL | 268-274 | 9.444 |
| DeoR | 182-197 | 8.672 |
| Ada | 282-309 | 8.440 |
| LexA | 263-282 | 8.417 |
| GalR | 24-39 | 8.178 |
| GalS | 24-39 | 8.178 |
| GlpR | 378-397 | 7.802 |
| FruR | 175-192 | 7.397 |
| Fur | 58-72 | 7.273 |
| XylR | 61-78 | 7.266 |
| DnaA | 227-235 | 7.146 |
| CpxR | 299-313 | 6.901 |
| TorR | 357-366 | 6.790 |
| Rob | 52-72 | 6.778 |
| NorR | 209-225 | 6.649 |
| DcuR | 284-338 | 6.592 |
| FadR | 185-201 | 6.588 |
| LacI | 67-87 | 6.586 |
| NtrC | 373-389 | 6.539 |
| CueR | 357-375 | 6.329 |
| OxyR | 335-379 | 6.244 |
| TrpR | 177-194 | 5.775 |