| TF name | Position | PWM scan score |
| ArcA | 335-395 | 34.250 |
| CytR | 338-377 | 24.826 |
| CysB | 332-373 | 18.405 |
| H-NS | 371-385 | 17.432 |
| Nac | 173-187 | 17.183 |
| GcvA | 334-362 | 16.956 |
| FNR | 355-376 | 15.629 |
| NagC | 231-253 | 15.622 |
| OmpR | 337-356 | 14.734 |
| CRP | 172-193 | 14.448 |
| GntR | 172-191 | 14.243 |
| MarA | 363-383 | 14.238 |
| DeoR | 333-348 | 13.977 |
| Fis | 328-348 | 13.781 |
| DcuR | 27-81 | 13.542 |
| IdnR | 235-250 | 12.712 |
| Ada | 27-54 | 12.301 |
| ArgR | 331-346 | 12.281 |
| PhoB | 372-391 | 12.197 |
| CpxR | 98-112 | 12.074 |
| Mlc | 47-69 | 12.054 |
| ModE | 212-238 | 11.946 |
| AgaR | 162-185 | 11.942 |
| SoxS | 338-355 | 11.923 |
| GlpR | 174-193 | 11.898 |
| GadE | 45-64 | 11.886 |
| IHF | 368-380 | 11.762 |
| XylR | 367-384 | 11.582 |
| Lrp | 227-238 | 11.268 |
| OxyR | 342-386 | 11.225 |
| TorR | 321-330 | 10.810 |
| Fur | 365-379 | 10.551 |
| Rob | 63-83 | 10.431 |
| UxuR | 9-26 | 10.300 |
| TyrR | 366-387 | 10.271 |
| ArgP | 176-188 | 10.173 |
| MetJ | 267-274 | 9.850 |
| UlaR | 215-234 | 9.685 |
| PhoP | 142-158 | 9.681 |
| DnaA | 179-187 | 9.103 |
| NarP | 83-89 | 8.509 |
| PspF | 368-384 | 8.382 |
| AraC | 34-51 | 8.260 |
| LexA | 224-243 | 8.136 |
| NarL | 176-182 | 7.884 |
| MelR | 371-388 | 7.884 |
| RcsB | 335-348 | 7.647 |
| NorR | 174-190 | 7.465 |
| GalR | 50-65 | 7.215 |
| GalS | 50-65 | 7.215 |
| FhlA | 194-233 | 6.632 |
| PurR | 98-113 | 6.279 |
| MetR | 210-233 | 5.418 |
| FruR | 13-30 | 5.393 |
| NtrC | 276-292 | 5.337 |