| TF name | Position | PWM scan score |
| ArcA | 242-302 | 21.642 |
| UlaR | 143-162 | 21.623 |
| NagC | 369-391 | 19.438 |
| MarA | 87-107 | 18.564 |
| FNR | 137-158 | 17.096 |
| MetR | 138-161 | 16.331 |
| Mlc | 260-282 | 16.260 |
| CpxR | 255-269 | 15.873 |
| CRP | 134-155 | 14.659 |
| GadE | 369-388 | 14.625 |
| OmpR | 368-387 | 14.381 |
| LacI | 103-123 | 14.090 |
| GntR | 132-151 | 13.775 |
| PhoP | 372-388 | 13.743 |
| Nac | 384-398 | 13.298 |
| UxuR | 306-323 | 13.036 |
| IHF | 97-109 | 12.593 |
| Fis | 379-399 | 12.591 |
| CysB | 144-185 | 12.458 |
| H-NS | 275-289 | 12.207 |
| PhoB | 85-104 | 12.189 |
| Lrp | 77-88 | 12.108 |
| GcvA | 364-392 | 12.003 |
| Fur | 96-110 | 11.792 |
| FruR | 360-377 | 11.716 |
| Rob | 278-298 | 11.613 |
| AraC | 298-315 | 11.581 |
| DeoR | 181-196 | 11.579 |
| AgaR | 274-297 | 11.447 |
| ArgR | 80-95 | 11.322 |
| GlpR | 136-155 | 11.257 |
| SoxS | 89-106 | 11.172 |
| TyrR | 372-393 | 11.159 |
| CytR | 258-297 | 11.149 |
| IdnR | 79-94 | 10.909 |
| RcsB | 379-392 | 10.810 |
| ArgP | 179-191 | 9.846 |
| XylR | 290-307 | 9.422 |
| NarL | 179-185 | 9.333 |
| ModE | 371-397 | 9.280 |
| GalS | 173-188 | 8.742 |
| GalR | 173-188 | 8.742 |
| OxyR | 151-195 | 8.699 |
| MetJ | 322-329 | 8.296 |
| RhaS | 45-61 | 8.195 |
| DnaA | 255-263 | 7.751 |
| Ada | 364-391 | 7.742 |
| MelR | 309-326 | 7.625 |
| TorR | 180-189 | 7.270 |
| MalT | 152-161 | 6.597 |
| NarP | 16-22 | 6.454 |
| FadR | 274-290 | 6.276 |
| NorR | 26-42 | 6.021 |
| PurR | 312-327 | 5.659 |
| DcuR | 83-137 | 5.628 |
| LexA | 367-386 | 5.536 |
| PspF | 165-181 | 5.407 |