| TF name | Position | PWM scan score |
| ArcA | 229-289 | 28.946 |
| DcuR | 236-290 | 21.415 |
| CytR | 244-283 | 19.992 |
| OmpR | 181-200 | 19.218 |
| CysB | 181-222 | 18.624 |
| FNR | 279-300 | 18.074 |
| GadE | 185-204 | 17.433 |
| AgaR | 62-85 | 16.496 |
| ArgP | 200-212 | 15.484 |
| PhoB | 59-78 | 15.140 |
| Mlc | 185-207 | 15.092 |
| H-NS | 183-197 | 14.910 |
| UlaR | 271-290 | 14.681 |
| Rob | 181-201 | 14.625 |
| GcvA | 180-208 | 14.501 |
| OxyR | 28-72 | 14.426 |
| Fur | 189-203 | 14.246 |
| DnaA | 287-295 | 13.779 |
| NagC | 187-209 | 13.652 |
| MarA | 53-73 | 13.528 |
| IdnR | 311-326 | 13.417 |
| DeoR | 181-196 | 13.151 |
| ModE | 172-198 | 13.045 |
| GlpR | 52-71 | 12.870 |
| CRP | 186-207 | 12.838 |
| XylR | 278-295 | 12.817 |
| IHF | 194-206 | 12.591 |
| TorR | 228-237 | 12.237 |
| SoxS | 48-65 | 12.212 |
| Fis | 355-375 | 11.938 |
| MetJ | 271-278 | 11.820 |
| PhoP | 246-262 | 11.609 |
| Nac | 137-151 | 11.584 |
| Lrp | 282-293 | 11.576 |
| GntR | 1-20 | 11.305 |
| RcsB | 277-290 | 11.176 |
| PurR | 125-140 | 10.637 |
| ArgR | 312-327 | 10.615 |
| FadR | 65-81 | 10.593 |
| MelR | 17-34 | 9.840 |
| AraC | 322-339 | 9.754 |
| TyrR | 298-319 | 9.590 |
| NarL | 200-206 | 9.580 |
| UxuR | 35-52 | 9.487 |
| LacI | 2-22 | 9.356 |
| MetR | 120-143 | 8.562 |
| CpxR | 181-195 | 8.283 |
| NorR | 188-204 | 8.271 |
| RhaS | 235-251 | 7.553 |
| NarP | 212-218 | 6.512 |
| PspF | 153-169 | 6.320 |
| Ada | 288-315 | 6.301 |
| GalR | 125-140 | 5.652 |
| GalS | 125-140 | 5.652 |