| TF name | Position | PWM scan score |
| DcuR | 141-195 | 29.829 |
| ArcA | 329-389 | 26.622 |
| OxyR | 176-220 | 24.828 |
| OmpR | 107-126 | 20.934 |
| MetR | 140-163 | 18.967 |
| CytR | 140-179 | 18.821 |
| NagC | 158-180 | 18.515 |
| CysB | 159-200 | 18.073 |
| AgaR | 141-164 | 17.480 |
| FNR | 155-176 | 16.609 |
| RcsB | 159-172 | 15.306 |
| IdnR | 118-133 | 15.022 |
| ArgP | 302-314 | 14.992 |
| Ada | 341-368 | 14.816 |
| Fis | 268-288 | 14.736 |
| NorR | 300-316 | 14.331 |
| Nac | 209-223 | 13.940 |
| ArgR | 103-118 | 13.778 |
| UlaR | 145-164 | 13.379 |
| H-NS | 155-169 | 13.228 |
| CpxR | 258-272 | 13.089 |
| XylR | 297-314 | 13.087 |
| PhoP | 272-288 | 12.859 |
| GadE | 154-173 | 12.850 |
| SoxS | 196-213 | 12.644 |
| IHF | 138-150 | 12.614 |
| Mlc | 143-165 | 12.165 |
| GcvA | 370-398 | 12.151 |
| CRP | 159-180 | 11.797 |
| PspF | 344-360 | 11.736 |
| AraC | 179-196 | 11.648 |
| LacI | 126-146 | 11.562 |
| Fur | 105-119 | 11.435 |
| FadR | 369-385 | 11.153 |
| Lrp | 155-166 | 11.142 |
| UxuR | 225-242 | 11.025 |
| ModE | 365-391 | 10.005 |
| PhoB | 108-127 | 9.641 |
| TorR | 202-211 | 9.592 |
| NarL | 358-364 | 9.333 |
| MarA | 110-130 | 9.290 |
| TyrR | 161-182 | 9.046 |
| DeoR | 316-331 | 8.656 |
| Rob | 285-305 | 8.605 |
| NarP | 77-83 | 8.594 |
| GntR | 371-390 | 8.455 |
| PurR | 138-153 | 7.935 |
| GalR | 138-153 | 7.753 |
| GalS | 138-153 | 7.753 |
| MalT | 256-265 | 7.499 |
| FhlA | 155-194 | 7.468 |
| FruR | 34-51 | 6.347 |
| NtrC | 76-92 | 5.872 |
| MelR | 31-48 | 5.861 |
| GlpR | 263-282 | 5.731 |
| MetJ | 179-186 | 5.132 |
| RhaS | 29-45 | 5.055 |