| TF name | Position | PWM scan score |
| DcuR | 35-89 | 18.343 |
| CRP | 84-105 | 17.671 |
| ArcA | 12-72 | 17.406 |
| TyrR | 318-339 | 14.427 |
| CysB | 318-359 | 14.357 |
| H-NS | 102-116 | 14.031 |
| GlpR | 104-123 | 13.981 |
| XylR | 340-357 | 13.831 |
| Fis | 336-356 | 13.054 |
| Fur | 336-350 | 13.028 |
| FNR | 87-108 | 12.536 |
| MarA | 42-62 | 12.471 |
| ArgR | 375-390 | 12.173 |
| RcsB | 30-43 | 12.085 |
| SoxS | 252-269 | 11.666 |
| OmpR | 101-120 | 11.534 |
| Lrp | 54-65 | 11.524 |
| IHF | 350-362 | 11.473 |
| MetR | 181-204 | 11.398 |
| PhoP | 329-345 | 11.292 |
| AgaR | 120-143 | 10.900 |
| PhoB | 42-61 | 10.827 |
| TorR | 236-245 | 10.714 |
| Mlc | 86-108 | 10.633 |
| GadE | 323-342 | 10.045 |
| Nac | 22-36 | 9.849 |
| Rob | 342-362 | 9.800 |
| AraC | 312-329 | 9.477 |
| PspF | 2-18 | 9.292 |
| DeoR | 237-252 | 9.253 |
| RhaS | 177-193 | 8.913 |
| GcvA | 285-313 | 8.903 |
| UlaR | 189-208 | 8.892 |
| Ada | 125-152 | 8.507 |
| CytR | 189-228 | 8.389 |
| ModE | 120-146 | 8.154 |
| DnaA | 235-243 | 8.137 |
| NarL | 56-62 | 7.995 |
| ArgP | 101-113 | 7.950 |
| GalR | 211-226 | 7.520 |
| GalS | 211-226 | 7.520 |
| UxuR | 54-71 | 7.399 |
| CpxR | 374-388 | 7.301 |
| LexA | 231-250 | 7.232 |
| IdnR | 133-148 | 7.152 |
| PurR | 187-202 | 6.988 |
| NarP | 57-63 | 6.591 |
| LacI | 235-255 | 6.032 |
| FruR | 347-364 | 5.995 |
| FadR | 73-89 | 5.985 |
| NorR | 52-68 | 5.857 |
| OxyR | 324-368 | 5.812 |
| MetJ | 138-145 | 5.609 |
| NagC | 366-388 | 5.501 |
| MalT | 359-368 | 5.490 |
| NtrC | 363-379 | 5.003 |