| TF name | Position | PWM scan score |
| NagC | 350-372 | 20.076 |
| ArcA | 169-229 | 17.509 |
| CysB | 341-382 | 15.712 |
| UxuR | 135-152 | 15.625 |
| CpxR | 187-201 | 15.151 |
| FNR | 169-190 | 14.828 |
| Nac | 47-61 | 14.597 |
| DcuR | 146-200 | 14.213 |
| OmpR | 363-382 | 13.716 |
| GcvA | 363-391 | 13.382 |
| CytR | 350-389 | 13.193 |
| Fis | 367-387 | 12.625 |
| PspF | 213-229 | 12.216 |
| SoxS | 120-137 | 12.113 |
| DnaA | 171-179 | 11.932 |
| NorR | 221-237 | 11.739 |
| PhoP | 185-201 | 11.695 |
| GlpR | 365-384 | 11.590 |
| PhoB | 366-385 | 11.585 |
| Rob | 180-200 | 11.247 |
| DeoR | 121-136 | 11.160 |
| MetR | 181-204 | 11.103 |
| H-NS | 368-382 | 10.887 |
| GntR | 363-382 | 10.814 |
| MelR | 46-63 | 10.588 |
| IHF | 254-266 | 10.371 |
| LexA | 92-111 | 10.322 |
| MarA | 294-314 | 10.292 |
| AgaR | 220-243 | 10.187 |
| ArgP | 373-385 | 10.185 |
| Lrp | 145-156 | 10.141 |
| GadE | 368-387 | 10.118 |
| GalR | 275-290 | 9.610 |
| GalS | 275-290 | 9.610 |
| Mlc | 174-196 | 9.353 |
| CRP | 183-204 | 9.266 |
| UlaR | 349-368 | 9.222 |
| CaiF | 186-230 | 8.811 |
| RcsB | 43-56 | 8.570 |
| ModE | 211-237 | 8.442 |
| NarL | 297-303 | 8.439 |
| ArgR | 61-76 | 8.259 |
| OxyR | 218-262 | 8.114 |
| AraC | 357-374 | 7.937 |
| IdnR | 273-288 | 7.367 |
| TyrR | 235-256 | 7.308 |
| PurR | 275-290 | 7.265 |
| TorR | 350-359 | 7.080 |
| XylR | 189-206 | 6.901 |
| NtrC | 282-298 | 6.882 |
| CueR | 117-135 | 6.584 |
| Fur | 128-142 | 6.128 |
| LacI | 177-197 | 6.002 |
| RhaS | 118-134 | 5.986 |
| MalT | 205-214 | 5.749 |
| FruR | 178-195 | 5.419 |
| Ada | 198-225 | 5.247 |