| TF name | Position | PWM scan score |
| ArcA | 217-277 | 30.322 |
| ModE | 289-315 | 16.745 |
| CytR | 174-213 | 16.488 |
| FNR | 255-276 | 16.111 |
| PspF | 138-154 | 15.557 |
| Rob | 372-392 | 15.403 |
| H-NS | 241-255 | 15.268 |
| Fur | 204-218 | 15.111 |
| CysB | 204-245 | 14.793 |
| DeoR | 288-303 | 14.682 |
| DcuR | 225-279 | 14.556 |
| OmpR | 139-158 | 14.530 |
| AgaR | 232-255 | 14.445 |
| Mlc | 235-257 | 14.420 |
| PhoP | 229-245 | 14.372 |
| OxyR | 216-260 | 14.182 |
| SoxS | 249-266 | 13.784 |
| TorR | 268-277 | 13.664 |
| ArgR | 137-152 | 13.332 |
| Fis | 243-263 | 13.178 |
| UlaR | 261-280 | 13.003 |
| CpxR | 208-222 | 12.930 |
| GadE | 246-265 | 12.878 |
| UxuR | 276-293 | 12.603 |
| Nac | 243-257 | 11.981 |
| GcvA | 138-166 | 11.888 |
| IHF | 250-262 | 11.840 |
| MetJ | 218-225 | 11.820 |
| CRP | 377-398 | 11.441 |
| RcsB | 372-385 | 11.436 |
| MelR | 170-187 | 11.178 |
| NorR | 5-21 | 11.128 |
| NagC | 233-255 | 10.952 |
| MarA | 22-42 | 10.543 |
| PhoB | 219-238 | 10.385 |
| XylR | 171-188 | 10.339 |
| TyrR | 265-286 | 10.188 |
| ArgP | 249-261 | 9.831 |
| Lrp | 245-256 | 9.688 |
| GlpR | 11-30 | 9.370 |
| PurR | 206-221 | 9.234 |
| NarL | 140-146 | 8.993 |
| AraC | 205-222 | 8.914 |
| FadR | 9-25 | 8.603 |
| LacI | 211-231 | 7.889 |
| Ada | 357-384 | 7.463 |
| RhaS | 12-28 | 7.410 |
| IdnR | 236-251 | 7.179 |
| FruR | 180-197 | 7.003 |
| MalT | 345-354 | 6.961 |
| GntR | 117-136 | 6.713 |
| NarP | 303-309 | 6.379 |
| DnaA | 13-21 | 5.831 |
| GalS | 206-221 | 5.677 |
| GalR | 206-221 | 5.677 |
| NtrC | 43-59 | 5.360 |