| TF name | Position | PWM scan score |
| ArcA | 10-70 | 29.293 |
| OmpR | 296-315 | 22.155 |
| CysB | 52-93 | 18.367 |
| CytR | 224-263 | 17.737 |
| OxyR | 345-389 | 17.421 |
| H-NS | 322-336 | 15.840 |
| FNR | 291-312 | 15.824 |
| Fis | 291-311 | 15.539 |
| CpxR | 53-67 | 15.265 |
| CRP | 39-60 | 15.072 |
| SoxS | 327-344 | 15.068 |
| GntR | 372-391 | 15.025 |
| DeoR | 43-58 | 14.972 |
| NagC | 300-322 | 14.911 |
| PhoB | 333-352 | 14.493 |
| LexA | 122-141 | 14.466 |
| GcvA | 370-398 | 13.934 |
| AgaR | 240-263 | 13.932 |
| TyrR | 291-312 | 13.741 |
| MarA | 50-70 | 13.715 |
| Nac | 224-238 | 13.619 |
| CaiF | 111-155 | 13.218 |
| PhoP | 5-21 | 12.961 |
| IHF | 291-303 | 12.705 |
| Rob | 308-328 | 12.295 |
| FhlA | 30-69 | 12.282 |
| MelR | 71-88 | 12.187 |
| Fur | 69-83 | 12.040 |
| UlaR | 287-306 | 11.917 |
| Mlc | 298-320 | 11.665 |
| UxuR | 66-83 | 11.512 |
| RcsB | 223-236 | 11.322 |
| GadE | 342-361 | 11.267 |
| MetR | 286-309 | 11.102 |
| GlpR | 57-76 | 10.714 |
| Lrp | 250-261 | 10.597 |
| IdnR | 245-260 | 10.409 |
| NarL | 67-73 | 10.377 |
| ModE | 235-261 | 10.351 |
| DcuR | 270-324 | 10.167 |
| ArgP | 231-243 | 10.092 |
| MetJ | 37-44 | 9.765 |
| NorR | 373-389 | 9.765 |
| PspF | 276-292 | 9.614 |
| AraC | 381-398 | 8.987 |
| ArgR | 18-33 | 8.619 |
| XylR | 293-310 | 8.232 |
| DnaA | 234-242 | 8.112 |
| Ada | 235-262 | 7.913 |
| PurR | 293-308 | 7.666 |
| NarP | 343-349 | 6.794 |
| FadR | 17-33 | 6.790 |
| TorR | 290-299 | 6.257 |
| FruR | 97-114 | 5.703 |
| NtrC | 365-381 | 5.534 |
| LacI | 12-32 | 5.136 |