| TF name | Position | PWM scan score |
| ArcA | 270-330 | 32.235 |
| TyrR | 266-287 | 23.065 |
| OmpR | 9-28 | 19.203 |
| DeoR | 76-91 | 18.566 |
| H-NS | 378-392 | 17.535 |
| ArgR | 16-31 | 17.273 |
| CysB | 258-299 | 16.661 |
| Fur | 291-305 | 16.606 |
| NagC | 10-32 | 16.482 |
| OxyR | 197-241 | 16.267 |
| DcuR | 173-227 | 16.245 |
| GlpR | 380-399 | 15.443 |
| UlaR | 115-134 | 15.393 |
| CRP | 232-253 | 15.303 |
| SoxS | 21-38 | 15.180 |
| FNR | 291-312 | 14.904 |
| MarA | 19-39 | 14.768 |
| GadE | 7-26 | 14.692 |
| GcvA | 293-321 | 14.403 |
| IHF | 214-226 | 14.230 |
| AraC | 224-241 | 13.929 |
| RcsB | 227-240 | 13.870 |
| Mlc | 183-205 | 13.453 |
| PhoP | 162-178 | 13.313 |
| Fis | 373-393 | 13.155 |
| MetR | 9-32 | 12.979 |
| UxuR | 24-41 | 12.781 |
| Rob | 319-339 | 12.595 |
| Nac | 206-220 | 12.546 |
| ModE | 126-152 | 12.095 |
| MelR | 211-228 | 12.089 |
| XylR | 17-34 | 12.085 |
| AgaR | 170-193 | 11.997 |
| Ada | 362-389 | 11.848 |
| PhoB | 9-28 | 11.747 |
| Lrp | 316-327 | 11.548 |
| ArgP | 324-336 | 11.519 |
| CytR | 301-340 | 11.502 |
| CpxR | 188-202 | 11.270 |
| TorR | 375-384 | 10.422 |
| PspF | 288-304 | 10.148 |
| NarL | 56-62 | 10.130 |
| GntR | 227-246 | 9.907 |
| FadR | 209-225 | 9.456 |
| LexA | 351-370 | 9.098 |
| LacI | 35-55 | 8.443 |
| IdnR | 373-388 | 8.438 |
| NtrC | 46-62 | 8.329 |
| RhaS | 336-352 | 7.931 |
| NarP | 220-226 | 7.762 |
| FhlA | 347-386 | 7.578 |
| MalT | 178-187 | 7.441 |
| FruR | 105-122 | 7.371 |
| DnaA | 26-34 | 7.194 |
| MetJ | 325-332 | 6.145 |
| CaiF | 318-362 | 5.445 |
| NorR | 111-127 | 5.407 |