| TF name | Position | PWM scan score |
| ArcA | 18-78 | 32.235 |
| TyrR | 14-35 | 23.065 |
| Mlc | 128-150 | 20.184 |
| CysB | 132-173 | 19.856 |
| DcuR | 112-166 | 18.699 |
| H-NS | 126-140 | 17.535 |
| Fur | 39-53 | 16.606 |
| GlpR | 128-147 | 15.443 |
| OmpR | 31-50 | 15.286 |
| OxyR | 22-66 | 14.978 |
| FNR | 39-60 | 14.904 |
| Ada | 126-153 | 14.880 |
| CRP | 126-147 | 14.475 |
| GcvA | 41-69 | 14.403 |
| AgaR | 126-149 | 14.245 |
| GntR | 372-391 | 14.135 |
| NagC | 130-152 | 14.042 |
| MetR | 125-148 | 13.983 |
| RcsB | 68-81 | 13.678 |
| MarA | 111-131 | 13.671 |
| UlaR | 136-155 | 13.211 |
| SoxS | 60-77 | 13.182 |
| Fis | 121-141 | 13.155 |
| Nac | 254-268 | 12.699 |
| Rob | 67-87 | 12.595 |
| MetJ | 309-316 | 12.367 |
| GadE | 126-145 | 12.365 |
| XylR | 335-352 | 12.109 |
| UxuR | 315-332 | 12.056 |
| CpxR | 221-235 | 11.828 |
| Lrp | 64-75 | 11.548 |
| PhoP | 125-141 | 11.547 |
| ArgP | 72-84 | 11.519 |
| CytR | 49-88 | 11.502 |
| ArgR | 383-398 | 11.278 |
| ModE | 7-33 | 10.905 |
| IHF | 39-51 | 10.820 |
| TorR | 123-132 | 10.422 |
| LacI | 237-257 | 10.333 |
| PspF | 36-52 | 10.148 |
| AraC | 247-264 | 9.876 |
| IdnR | 134-149 | 9.754 |
| MelR | 209-226 | 9.586 |
| PhoB | 281-300 | 9.375 |
| NarL | 122-128 | 9.197 |
| LexA | 99-118 | 9.098 |
| DeoR | 124-139 | 8.693 |
| DnaA | 257-265 | 8.160 |
| RhaS | 84-100 | 7.931 |
| FruR | 293-310 | 7.738 |
| NorR | 132-148 | 7.710 |
| FhlA | 95-134 | 7.578 |
| NtrC | 232-248 | 7.470 |
| GalR | 275-290 | 7.417 |
| GalS | 275-290 | 7.417 |
| NarP | 332-338 | 6.512 |
| CaiF | 66-110 | 5.445 |