| TF name | Position | PWM scan score |
| ArcA | 127-187 | 21.894 |
| CytR | 193-232 | 17.221 |
| ModE | 107-133 | 14.893 |
| Rob | 140-160 | 14.618 |
| Mlc | 145-167 | 14.191 |
| FNR | 122-143 | 13.942 |
| CpxR | 129-143 | 13.851 |
| CysB | 137-178 | 13.772 |
| TyrR | 191-212 | 13.733 |
| IHF | 118-130 | 13.348 |
| Fur | 137-151 | 13.340 |
| GlpR | 75-94 | 13.001 |
| MarA | 377-397 | 12.868 |
| OmpR | 195-214 | 12.562 |
| PhoP | 195-211 | 12.385 |
| H-NS | 197-211 | 12.254 |
| ArgP | 387-399 | 12.240 |
| AraC | 215-232 | 11.803 |
| CRP | 119-140 | 11.780 |
| Lrp | 383-394 | 11.719 |
| DcuR | 340-394 | 11.715 |
| Ada | 104-131 | 11.680 |
| SoxS | 375-392 | 11.522 |
| GadE | 109-128 | 11.255 |
| RcsB | 384-397 | 10.305 |
| DeoR | 195-210 | 10.233 |
| XylR | 160-177 | 10.215 |
| LacI | 329-349 | 10.105 |
| DnaA | 391-399 | 10.007 |
| Fis | 137-157 | 10.002 |
| UlaR | 82-101 | 9.998 |
| NorR | 130-146 | 9.765 |
| NagC | 374-396 | 9.754 |
| PhoB | 154-173 | 9.680 |
| GalR | 245-260 | 9.582 |
| GalS | 245-260 | 9.582 |
| Nac | 207-221 | 9.165 |
| NarL | 123-129 | 9.129 |
| NtrC | 179-195 | 8.859 |
| GntR | 164-183 | 8.709 |
| TorR | 388-397 | 8.399 |
| FadR | 329-345 | 8.395 |
| AgaR | 180-203 | 8.345 |
| OxyR | 197-241 | 8.254 |
| FruR | 246-263 | 8.154 |
| NarP | 131-137 | 7.400 |
| PspF | 115-131 | 7.170 |
| ArgR | 178-193 | 6.624 |
| RhaS | 148-164 | 6.475 |
| MetR | 293-316 | 6.307 |
| TrpR | 181-198 | 6.220 |
| IdnR | 2-17 | 6.101 |
| UxuR | 123-140 | 5.972 |
| MetJ | 308-315 | 5.889 |
| MelR | 380-397 | 5.802 |
| PurR | 193-208 | 5.304 |
| GcvA | 190-218 | 5.102 |