| TF name | Position | PWM scan score |
| ArcA | 14-74 | 29.559 |
| DcuR | 16-70 | 27.163 |
| CysB | 169-210 | 25.788 |
| CytR | 273-312 | 22.734 |
| PhoB | 145-164 | 19.403 |
| OxyR | 18-62 | 19.381 |
| NagC | 306-328 | 18.850 |
| GadE | 278-297 | 18.504 |
| GlpR | 103-122 | 17.825 |
| OmpR | 274-293 | 17.512 |
| AgaR | 33-56 | 17.159 |
| FNR | 26-47 | 16.811 |
| Fur | 148-162 | 15.838 |
| MetR | 16-39 | 15.634 |
| Nac | 172-186 | 15.294 |
| Fis | 280-300 | 15.142 |
| H-NS | 277-291 | 15.037 |
| ArgR | 283-298 | 14.550 |
| GcvA | 343-371 | 14.475 |
| SoxS | 282-299 | 14.453 |
| GntR | 274-293 | 14.195 |
| IHF | 160-172 | 13.725 |
| Mlc | 185-207 | 13.673 |
| RcsB | 201-214 | 12.970 |
| Lrp | 167-178 | 12.541 |
| Rob | 99-119 | 12.424 |
| CpxR | 198-212 | 12.219 |
| CRP | 23-44 | 12.203 |
| MelR | 341-358 | 12.107 |
| PspF | 295-311 | 12.028 |
| DeoR | 1-16 | 11.930 |
| TyrR | 95-116 | 11.898 |
| PhoP | 108-124 | 11.749 |
| XylR | 196-213 | 11.744 |
| MarA | 319-339 | 11.559 |
| PurR | 21-36 | 11.394 |
| IdnR | 3-18 | 11.275 |
| UlaR | 26-45 | 11.098 |
| AraC | 197-214 | 10.847 |
| ModE | 334-360 | 9.998 |
| ArgP | 106-118 | 9.805 |
| TorR | 173-182 | 9.785 |
| Ada | 13-40 | 9.716 |
| UxuR | 19-36 | 9.662 |
| NtrC | 269-285 | 9.266 |
| LacI | 201-221 | 8.705 |
| FruR | 23-40 | 8.442 |
| NarL | 146-152 | 8.154 |
| FhlA | 272-311 | 7.489 |
| TrpR | 322-339 | 7.488 |
| NarP | 374-380 | 7.281 |
| FadR | 218-234 | 6.911 |
| MalT | 62-71 | 6.603 |
| GalS | 169-184 | 6.091 |
| GalR | 169-184 | 6.091 |
| NorR | 25-41 | 5.585 |
| MetJ | 77-84 | 5.552 |