| TF name | Position | PWM scan score |
| ArcA | 13-73 | 21.586 |
| CysB | 137-178 | 19.258 |
| OmpR | 55-74 | 16.218 |
| CRP | 7-28 | 15.424 |
| Fis | 155-175 | 15.029 |
| XylR | 133-150 | 15.020 |
| Rob | 166-186 | 14.678 |
| PhoP | 149-165 | 13.644 |
| FNR | 10-31 | 13.371 |
| Nac | 126-140 | 13.123 |
| MetR | 59-82 | 12.866 |
| CytR | 165-204 | 12.119 |
| AgaR | 59-82 | 11.276 |
| IHF | 71-83 | 11.221 |
| CaiF | 148-192 | 11.053 |
| GcvA | 118-146 | 10.915 |
| Lrp | 251-262 | 10.682 |
| Mlc | 43-65 | 10.521 |
| ArgP | 129-141 | 10.240 |
| TorR | 37-46 | 10.234 |
| CpxR | 180-194 | 10.050 |
| FadR | 3-19 | 10.043 |
| MalT | 227-236 | 9.923 |
| H-NS | 124-138 | 9.866 |
| TyrR | 34-55 | 9.838 |
| ArgR | 40-55 | 9.675 |
| DeoR | 346-361 | 9.564 |
| SoxS | 121-138 | 9.280 |
| UxuR | 127-144 | 9.034 |
| UlaR | 113-132 | 9.005 |
| DnaA | 129-137 | 8.703 |
| GntR | 2-21 | 8.515 |
| NagC | 181-203 | 8.238 |
| MarA | 6-26 | 8.219 |
| MelR | 100-117 | 8.199 |
| NarP | 282-288 | 7.806 |
| GadE | 162-181 | 7.801 |
| PhoB | 15-34 | 7.442 |
| NarL | 24-30 | 7.438 |
| DcuR | 60-114 | 7.240 |
| GlpR | 326-345 | 7.156 |
| OxyR | 104-148 | 6.774 |
| Ada | 121-148 | 6.741 |
| LexA | 38-57 | 6.684 |
| PspF | 115-131 | 6.609 |
| RhaS | 352-368 | 6.501 |
| ModE | 103-129 | 6.313 |
| NorR | 15-31 | 6.196 |
| AraC | 23-40 | 6.174 |
| Fur | 144-158 | 6.091 |
| LacI | 362-382 | 5.787 |
| RcsB | 13-26 | 5.454 |
| CueR | 147-165 | 5.006 |