| TF name | Position | PWM scan score |
| ArcA | 46-106 | 17.445 |
| Fur | 244-258 | 16.687 |
| DcuR | 318-372 | 16.184 |
| GadE | 335-354 | 15.382 |
| OmpR | 334-353 | 13.599 |
| UlaR | 46-65 | 13.387 |
| GntR | 345-364 | 12.963 |
| CysB | 320-361 | 12.873 |
| MelR | 173-190 | 12.030 |
| Nac | 57-71 | 11.949 |
| H-NS | 336-350 | 11.516 |
| ArgR | 240-255 | 11.451 |
| OxyR | 70-114 | 11.050 |
| XylR | 294-311 | 11.002 |
| CRP | 345-366 | 10.513 |
| RcsB | 374-387 | 10.478 |
| CpxR | 245-259 | 10.414 |
| Lrp | 297-308 | 10.339 |
| FNR | 61-82 | 10.053 |
| AgaR | 43-66 | 10.008 |
| IHF | 217-229 | 9.997 |
| ArgP | 222-234 | 9.933 |
| GcvA | 241-269 | 9.830 |
| PspF | 84-100 | 9.792 |
| CytR | 70-109 | 9.567 |
| IdnR | 89-104 | 9.482 |
| NarL | 246-252 | 9.444 |
| MetJ | 94-101 | 9.382 |
| NorR | 243-259 | 9.315 |
| Fis | 85-105 | 9.241 |
| AraC | 238-255 | 9.132 |
| PhoP | 78-94 | 8.933 |
| TyrR | 330-351 | 8.809 |
| DeoR | 92-107 | 8.765 |
| PhoB | 288-307 | 8.376 |
| ModE | 365-391 | 7.817 |
| Ada | 231-258 | 7.755 |
| TorR | 91-100 | 7.664 |
| NarP | 23-29 | 7.281 |
| PurR | 330-345 | 6.886 |
| Rob | 331-351 | 6.833 |
| MetR | 55-78 | 6.755 |
| LexA | 86-105 | 6.733 |
| GlpR | 337-356 | 6.429 |
| NagC | 339-361 | 6.327 |
| NtrC | 241-257 | 6.072 |
| FruR | 356-373 | 5.967 |
| UxuR | 74-91 | 5.915 |
| SoxS | 322-339 | 5.556 |
| LacI | 207-227 | 5.445 |
| CueR | 215-233 | 5.006 |