| TF name | Position | PWM scan score |
| ArcA | 67-127 | 28.975 |
| AgaR | 225-248 | 19.363 |
| CytR | 211-250 | 17.581 |
| CysB | 235-276 | 17.228 |
| XylR | 300-317 | 15.865 |
| MarA | 190-210 | 15.752 |
| CRP | 298-319 | 15.703 |
| GcvA | 297-325 | 15.280 |
| FhlA | 262-301 | 15.223 |
| OmpR | 303-322 | 15.172 |
| FNR | 265-286 | 15.113 |
| MelR | 151-168 | 14.679 |
| Fur | 297-311 | 14.020 |
| IHF | 300-312 | 13.837 |
| MetR | 320-343 | 13.320 |
| DcuR | 287-341 | 13.015 |
| H-NS | 303-317 | 12.953 |
| TyrR | 298-319 | 12.943 |
| UlaR | 118-137 | 12.887 |
| NagC | 265-287 | 12.752 |
| Fis | 59-79 | 12.663 |
| GadE | 269-288 | 12.486 |
| OxyR | 261-305 | 12.410 |
| CpxR | 366-380 | 12.025 |
| PhoB | 284-303 | 11.984 |
| GlpR | 69-88 | 11.933 |
| DeoR | 319-334 | 11.869 |
| ArgR | 83-98 | 11.524 |
| Lrp | 268-279 | 11.305 |
| RcsB | 266-279 | 11.234 |
| AraC | 326-343 | 11.025 |
| SoxS | 288-305 | 10.899 |
| TorR | 268-277 | 10.764 |
| NorR | 99-115 | 10.762 |
| DnaA | 96-104 | 10.244 |
| Nac | 117-131 | 10.219 |
| ArgP | 270-282 | 9.930 |
| ModE | 247-273 | 9.900 |
| UxuR | 105-122 | 9.729 |
| Mlc | 106-128 | 9.601 |
| LexA | 210-229 | 9.495 |
| NarL | 299-305 | 9.240 |
| PhoP | 119-135 | 9.158 |
| Ada | 112-139 | 9.088 |
| Rob | 209-229 | 8.936 |
| PspF | 297-313 | 8.748 |
| GalR | 317-332 | 8.477 |
| GalS | 317-332 | 8.477 |
| GntR | 264-283 | 8.461 |
| MetJ | 209-216 | 8.331 |
| PurR | 326-341 | 7.656 |
| CaiF | 268-312 | 7.610 |
| LacI | 316-336 | 7.355 |
| IdnR | 53-68 | 6.645 |
| NtrC | 139-155 | 6.352 |
| FadR | 376-392 | 6.347 |
| FruR | 81-98 | 5.551 |
| NarP | 256-262 | 5.341 |
| MalT | 80-89 | 5.059 |