| TF name | Position | PWM scan score |
| ArcA | 287-347 | 28.230 |
| GcvA | 368-396 | 21.662 |
| Fur | 323-337 | 19.524 |
| OmpR | 227-246 | 17.608 |
| CysB | 195-236 | 16.373 |
| Mlc | 98-120 | 15.936 |
| DcuR | 182-236 | 15.855 |
| UlaR | 218-237 | 15.749 |
| CRP | 314-335 | 15.567 |
| FNR | 323-344 | 15.523 |
| GadE | 229-248 | 15.172 |
| GntR | 370-389 | 14.845 |
| LexA | 344-363 | 14.758 |
| GlpR | 313-332 | 14.749 |
| MarA | 314-334 | 14.619 |
| H-NS | 114-128 | 14.545 |
| NagC | 258-280 | 14.155 |
| IHF | 332-344 | 13.902 |
| CytR | 208-247 | 13.689 |
| MetR | 259-282 | 13.624 |
| AgaR | 240-263 | 13.091 |
| DeoR | 11-26 | 12.976 |
| PhoP | 101-117 | 12.969 |
| SoxS | 102-119 | 12.694 |
| ModE | 323-349 | 12.226 |
| Lrp | 180-191 | 11.935 |
| OxyR | 273-317 | 11.833 |
| Ada | 320-347 | 11.818 |
| RcsB | 180-193 | 11.706 |
| Fis | 303-323 | 11.704 |
| GalS | 318-333 | 11.704 |
| GalR | 318-333 | 11.704 |
| PhoB | 227-246 | 11.455 |
| AraC | 324-341 | 11.449 |
| ArgR | 363-378 | 11.021 |
| Nac | 321-335 | 10.820 |
| DnaA | 377-385 | 10.817 |
| Rob | 198-218 | 10.670 |
| NarL | 334-340 | 10.377 |
| NtrC | 189-205 | 9.637 |
| NorR | 325-341 | 9.604 |
| MelR | 220-237 | 9.592 |
| ArgP | 100-112 | 9.302 |
| UxuR | 303-320 | 9.222 |
| TyrR | 366-387 | 9.037 |
| FadR | 285-301 | 8.568 |
| CpxR | 206-220 | 8.339 |
| TorR | 257-266 | 8.006 |
| PspF | 210-226 | 7.848 |
| MetJ | 21-28 | 7.733 |
| XylR | 368-385 | 7.639 |
| FhlA | 258-297 | 7.544 |
| NarP | 275-281 | 7.347 |
| PurR | 3-18 | 6.467 |
| CueR | 24-42 | 5.617 |
| LacI | 166-186 | 5.505 |
| IdnR | 34-49 | 5.406 |