| TF name | Position | PWM scan score |
| ArcA | 140-200 | 29.460 |
| CysB | 137-178 | 23.207 |
| GcvA | 138-166 | 21.662 |
| Fur | 93-107 | 19.524 |
| Rob | 347-367 | 19.135 |
| SoxS | 202-219 | 18.025 |
| MarA | 200-220 | 17.647 |
| RcsB | 233-246 | 16.167 |
| OmpR | 349-368 | 15.711 |
| CRP | 84-105 | 15.567 |
| FNR | 93-114 | 15.523 |
| OxyR | 182-226 | 15.359 |
| GntR | 140-159 | 14.845 |
| CytR | 139-178 | 14.794 |
| LexA | 114-133 | 14.758 |
| GlpR | 83-102 | 14.749 |
| NagC | 28-50 | 14.155 |
| IHF | 102-114 | 13.902 |
| MetR | 29-52 | 13.624 |
| AgaR | 10-33 | 13.091 |
| Nac | 162-176 | 12.808 |
| H-NS | 83-97 | 12.310 |
| Lrp | 172-183 | 12.230 |
| ModE | 93-119 | 12.226 |
| Mlc | 136-158 | 12.058 |
| PhoB | 173-192 | 11.837 |
| Ada | 90-117 | 11.818 |
| Fis | 73-93 | 11.704 |
| GalR | 88-103 | 11.704 |
| GalS | 88-103 | 11.704 |
| PhoP | 74-90 | 11.557 |
| AraC | 94-111 | 11.449 |
| UlaR | 172-191 | 11.222 |
| ArgR | 133-148 | 11.021 |
| DnaA | 147-155 | 10.817 |
| GadE | 165-184 | 10.787 |
| DeoR | 28-43 | 10.560 |
| NarL | 104-110 | 10.377 |
| ArgP | 187-199 | 10.242 |
| DcuR | 1-55 | 10.060 |
| NorR | 95-111 | 9.604 |
| UxuR | 73-90 | 9.222 |
| TyrR | 136-157 | 9.037 |
| FadR | 55-71 | 8.568 |
| RhaS | 301-317 | 8.406 |
| MelR | 100-117 | 8.389 |
| TorR | 27-36 | 8.006 |
| CpxR | 355-369 | 7.880 |
| LacI | 195-215 | 7.852 |
| PspF | 99-115 | 7.838 |
| XylR | 138-155 | 7.639 |
| NtrC | 322-338 | 7.591 |
| FhlA | 28-67 | 7.544 |
| NarP | 45-51 | 7.347 |
| FruR | 178-195 | 6.647 |
| MetJ | 182-189 | 6.057 |
| PurR | 191-206 | 5.951 |
| IdnR | 18-33 | 5.312 |