| TF name | Position | PWM scan score |
| ArcA | 333-393 | 27.605 |
| FNR | 210-231 | 21.242 |
| NagC | 339-361 | 21.038 |
| OmpR | 224-243 | 18.127 |
| CysB | 76-117 | 18.060 |
| OxyR | 74-118 | 17.872 |
| IHF | 87-99 | 17.441 |
| GcvA | 330-358 | 16.745 |
| AgaR | 74-97 | 15.966 |
| H-NS | 224-238 | 15.960 |
| GadE | 69-88 | 15.727 |
| PhoP | 110-126 | 15.070 |
| Fis | 26-46 | 14.770 |
| GntR | 79-98 | 14.152 |
| Rob | 79-99 | 13.968 |
| CRP | 207-228 | 13.921 |
| ModE | 323-349 | 13.240 |
| Mlc | 228-250 | 12.512 |
| TyrR | 57-78 | 12.280 |
| Ada | 78-105 | 12.217 |
| SoxS | 122-139 | 11.302 |
| NorR | 332-348 | 11.192 |
| ArgP | 136-148 | 11.180 |
| CpxR | 69-83 | 10.873 |
| Lrp | 90-101 | 10.818 |
| LacI | 209-229 | 10.763 |
| CytR | 69-108 | 10.556 |
| MetJ | 132-139 | 10.363 |
| Nac | 62-76 | 10.061 |
| DeoR | 154-169 | 9.859 |
| UxuR | 63-80 | 9.850 |
| UlaR | 242-261 | 9.838 |
| XylR | 29-46 | 9.821 |
| DcuR | 90-144 | 9.684 |
| MetR | 312-335 | 9.656 |
| GlpR | 177-196 | 9.439 |
| ArgR | 383-398 | 9.041 |
| RcsB | 90-103 | 8.963 |
| PhoB | 329-348 | 8.514 |
| IdnR | 56-71 | 8.223 |
| NarL | 102-108 | 8.033 |
| FadR | 143-159 | 7.892 |
| TorR | 137-146 | 7.643 |
| MarA | 353-373 | 7.510 |
| DnaA | 86-94 | 7.425 |
| NarP | 70-76 | 7.423 |
| MelR | 126-143 | 7.289 |
| AraC | 88-105 | 7.218 |
| PspF | 224-240 | 7.210 |
| FruR | 5-22 | 7.209 |
| RhaS | 76-92 | 6.907 |
| Fur | 26-40 | 6.824 |
| GalR | 195-210 | 6.666 |
| GalS | 195-210 | 6.666 |
| MalT | 292-301 | 6.610 |
| PurR | 112-127 | 6.031 |