| TF name | Position | PWM scan score |
| ArcA | 279-339 | 21.600 |
| CytR | 177-216 | 18.871 |
| FNR | 300-321 | 17.732 |
| IHF | 230-242 | 16.001 |
| PhoB | 151-170 | 15.235 |
| OmpR | 298-317 | 14.871 |
| Fur | 230-244 | 13.670 |
| AraC | 119-136 | 12.937 |
| RcsB | 208-221 | 12.805 |
| Fis | 180-200 | 12.702 |
| GadE | 114-133 | 12.692 |
| UxuR | 227-244 | 12.687 |
| GntR | 122-141 | 12.545 |
| Rob | 130-150 | 12.525 |
| CRP | 124-145 | 12.432 |
| GlpR | 274-293 | 12.014 |
| DcuR | 283-337 | 11.933 |
| CpxR | 297-311 | 11.784 |
| ArgP | 280-292 | 11.667 |
| Lrp | 124-135 | 11.635 |
| AgaR | 229-252 | 11.598 |
| SoxS | 113-130 | 11.499 |
| Nac | 196-210 | 11.447 |
| H-NS | 123-137 | 11.309 |
| CysB | 242-283 | 11.027 |
| ArgR | 186-201 | 10.586 |
| XylR | 230-247 | 10.282 |
| ModE | 275-301 | 9.976 |
| MetR | 113-136 | 9.737 |
| Mlc | 210-232 | 9.727 |
| TyrR | 180-201 | 9.489 |
| DnaA | 229-237 | 9.331 |
| TorR | 4-13 | 9.263 |
| PurR | 284-299 | 9.237 |
| NagC | 212-234 | 8.831 |
| GcvA | 57-85 | 8.822 |
| PspF | 227-243 | 8.815 |
| UlaR | 278-297 | 8.757 |
| DeoR | 111-126 | 8.663 |
| OxyR | 79-123 | 8.513 |
| NarL | 280-286 | 8.481 |
| PhoP | 109-125 | 8.261 |
| MetJ | 204-211 | 8.251 |
| CaiF | 173-217 | 7.733 |
| MalT | 101-110 | 7.576 |
| RhaS | 212-228 | 7.335 |
| MarA | 344-364 | 6.870 |
| NtrC | 269-285 | 6.725 |
| FadR | 43-59 | 6.675 |
| IdnR | 4-19 | 6.635 |
| LacI | 5-25 | 6.556 |
| Ada | 185-212 | 6.405 |
| NarP | 335-341 | 6.261 |
| CueR | 27-45 | 5.711 |
| FruR | 297-314 | 5.574 |
| GalR | 284-299 | 5.467 |
| GalS | 284-299 | 5.467 |
| LexA | 47-66 | 5.466 |
| TrpR | 114-131 | 5.328 |
| NorR | 120-136 | 5.041 |