| TF name | Position | PWM scan score |
| ArcA | 188-248 | 26.532 |
| GadE | 199-218 | 18.759 |
| Rob | 198-218 | 18.751 |
| CRP | 192-213 | 18.305 |
| Mlc | 343-365 | 17.899 |
| DeoR | 188-203 | 16.944 |
| OmpR | 190-209 | 16.747 |
| CytR | 328-367 | 16.639 |
| CysB | 338-379 | 16.426 |
| GcvA | 148-176 | 15.787 |
| PhoB | 191-210 | 15.080 |
| NagC | 345-367 | 15.044 |
| FNR | 352-373 | 14.511 |
| ArgR | 233-248 | 14.385 |
| H-NS | 182-196 | 13.660 |
| FruR | 315-332 | 13.391 |
| UxuR | 205-222 | 13.231 |
| Fis | 65-85 | 13.150 |
| ArgP | 366-378 | 12.871 |
| IdnR | 185-200 | 12.712 |
| PhoP | 189-205 | 12.573 |
| GntR | 190-209 | 12.487 |
| IHF | 358-370 | 12.330 |
| UlaR | 355-374 | 11.943 |
| ModE | 352-378 | 11.758 |
| GlpR | 194-213 | 11.627 |
| MetR | 348-371 | 11.506 |
| Nac | 350-364 | 10.970 |
| Fur | 246-260 | 10.755 |
| DcuR | 111-165 | 10.752 |
| MarA | 230-250 | 10.358 |
| TrpR | 253-270 | 9.746 |
| OxyR | 340-384 | 9.731 |
| MelR | 195-212 | 9.533 |
| NarP | 282-288 | 9.477 |
| TyrR | 188-209 | 9.388 |
| RcsB | 362-375 | 9.381 |
| NarL | 217-223 | 9.333 |
| PspF | 192-208 | 9.292 |
| Lrp | 135-146 | 9.171 |
| LexA | 181-200 | 9.017 |
| DnaA | 369-377 | 8.866 |
| SoxS | 300-317 | 8.784 |
| AgaR | 117-140 | 8.672 |
| CpxR | 138-152 | 8.366 |
| TorR | 322-331 | 8.220 |
| NorR | 251-267 | 7.623 |
| XylR | 189-206 | 7.604 |
| FadR | 149-165 | 7.526 |
| LacI | 256-276 | 6.566 |
| FhlA | 125-164 | 6.412 |
| MetJ | 90-97 | 6.292 |
| MalT | 171-180 | 5.980 |
| Ada | 347-374 | 5.650 |
| PurR | 207-222 | 5.488 |