| TF name | Position | PWM scan score |
| ArcA | 270-330 | 21.727 |
| OxyR | 274-318 | 20.130 |
| Mlc | 364-386 | 19.552 |
| CysB | 345-386 | 18.956 |
| MarA | 321-341 | 18.245 |
| OmpR | 368-387 | 16.344 |
| AgaR | 280-303 | 15.637 |
| Fis | 211-231 | 15.173 |
| ModE | 271-297 | 14.509 |
| MelR | 279-296 | 14.489 |
| NagC | 291-313 | 14.333 |
| TorR | 373-382 | 14.100 |
| SoxS | 338-355 | 13.755 |
| GcvA | 339-367 | 13.746 |
| TyrR | 167-188 | 13.624 |
| GadE | 269-288 | 13.508 |
| FNR | 343-364 | 13.325 |
| IHF | 282-294 | 12.799 |
| MetR | 164-187 | 12.759 |
| UlaR | 350-369 | 12.652 |
| RcsB | 286-299 | 12.439 |
| CRP | 167-188 | 12.193 |
| PhoB | 350-369 | 12.029 |
| AraC | 160-177 | 12.019 |
| H-NS | 342-356 | 11.725 |
| PhoP | 296-312 | 11.483 |
| ArgR | 217-232 | 11.456 |
| UxuR | 345-362 | 11.361 |
| GntR | 202-221 | 10.660 |
| Lrp | 288-299 | 10.303 |
| Fur | 282-296 | 10.233 |
| NtrC | 215-231 | 10.164 |
| DcuR | 314-368 | 10.161 |
| Nac | 167-181 | 10.136 |
| CytR | 359-398 | 9.901 |
| PspF | 218-234 | 9.896 |
| XylR | 356-373 | 9.587 |
| LacI | 205-225 | 9.309 |
| DeoR | 172-187 | 9.302 |
| RhaS | 103-119 | 9.289 |
| NarL | 98-104 | 8.545 |
| Rob | 343-363 | 8.181 |
| ArgP | 377-389 | 8.127 |
| PurR | 381-396 | 7.188 |
| DnaA | 290-298 | 7.006 |
| LexA | 372-391 | 6.922 |
| CpxR | 171-185 | 6.659 |
| NorR | 180-196 | 5.813 |
| NarP | 40-46 | 5.708 |
| Ada | 226-253 | 5.700 |
| GlpR | 342-361 | 5.670 |
| FruR | 382-399 | 5.449 |
| MetJ | 238-245 | 5.204 |
| MalT | 15-24 | 5.189 |