| TF name | Position | PWM scan score |
| ArcA | 13-73 | 36.033 |
| CysB | 223-264 | 21.721 |
| NagC | 40-62 | 21.580 |
| OxyR | 151-195 | 19.864 |
| Ada | 24-51 | 18.449 |
| OmpR | 26-45 | 18.305 |
| CytR | 120-159 | 17.879 |
| PhoP | 31-47 | 17.252 |
| FNR | 8-29 | 17.147 |
| DcuR | 40-94 | 16.671 |
| H-NS | 24-38 | 16.212 |
| CpxR | 14-28 | 16.085 |
| GcvA | 29-57 | 15.534 |
| IHF | 33-45 | 15.365 |
| GntR | 275-294 | 14.823 |
| GadE | 24-43 | 14.360 |
| Fur | 289-303 | 14.286 |
| CRP | 280-301 | 13.980 |
| UlaR | 213-232 | 13.634 |
| AgaR | 209-232 | 13.496 |
| PhoB | 120-139 | 13.484 |
| Rob | 25-45 | 13.245 |
| SoxS | 20-37 | 13.191 |
| ArgR | 33-48 | 13.131 |
| ArgP | 32-44 | 12.975 |
| Nac | 348-362 | 12.853 |
| XylR | 348-365 | 12.806 |
| DeoR | 107-122 | 12.579 |
| Fis | 30-50 | 12.397 |
| MarA | 356-376 | 11.909 |
| FadR | 250-266 | 11.722 |
| NorR | 152-168 | 11.662 |
| RcsB | 286-299 | 11.562 |
| ModE | 366-392 | 11.442 |
| PspF | 337-353 | 10.692 |
| Lrp | 349-360 | 10.307 |
| Mlc | 309-331 | 10.220 |
| FruR | 78-95 | 9.967 |
| UxuR | 295-312 | 9.823 |
| TyrR | 2-23 | 9.798 |
| NarL | 351-357 | 9.580 |
| DnaA | 94-102 | 9.246 |
| MetJ | 138-145 | 9.177 |
| GlpR | 26-45 | 9.090 |
| MetR | 68-91 | 8.964 |
| MelR | 132-149 | 8.782 |
| LexA | 105-124 | 8.381 |
| AraC | 304-321 | 7.819 |
| NarP | 115-121 | 7.710 |
| IdnR | 202-217 | 7.340 |
| TorR | 249-258 | 6.965 |
| RhaS | 319-335 | 6.782 |
| FhlA | 273-312 | 6.342 |
| TrpR | 282-299 | 6.190 |
| NtrC | 20-36 | 5.535 |
| LacI | 359-379 | 5.300 |