| TF name | Position | PWM scan score |
| ArcA | 67-127 | 31.635 |
| CysB | 89-130 | 23.093 |
| OmpR | 270-289 | 21.469 |
| GcvA | 79-107 | 20.389 |
| AgaR | 204-227 | 19.939 |
| ArgR | 203-218 | 19.785 |
| OxyR | 118-162 | 18.478 |
| NagC | 68-90 | 17.480 |
| Mlc | 105-127 | 17.361 |
| FNR | 274-295 | 16.794 |
| ArgP | 282-294 | 16.747 |
| Fur | 340-354 | 16.628 |
| GadE | 70-89 | 16.501 |
| CytR | 82-121 | 16.126 |
| Fis | 273-293 | 15.563 |
| CRP | 199-220 | 14.644 |
| IdnR | 265-280 | 14.515 |
| H-NS | 82-96 | 14.232 |
| RcsB | 9-22 | 13.575 |
| PhoB | 322-341 | 13.405 |
| IHF | 318-330 | 13.201 |
| XylR | 169-186 | 12.812 |
| DcuR | 184-238 | 12.743 |
| TyrR | 78-99 | 12.615 |
| UlaR | 280-299 | 12.545 |
| GalS | 341-356 | 12.528 |
| GalR | 341-356 | 12.528 |
| DeoR | 276-291 | 12.390 |
| PhoP | 212-228 | 12.280 |
| Lrp | 321-332 | 11.852 |
| Nac | 209-223 | 11.684 |
| PurR | 267-282 | 11.536 |
| CpxR | 149-163 | 11.526 |
| GlpR | 273-292 | 11.346 |
| UxuR | 144-161 | 11.280 |
| ModE | 200-226 | 10.662 |
| Rob | 171-191 | 10.506 |
| NtrC | 164-180 | 10.473 |
| MetR | 91-114 | 10.339 |
| PspF | 154-170 | 10.084 |
| Ada | 290-317 | 9.991 |
| MetJ | 241-248 | 9.980 |
| DnaA | 209-217 | 9.880 |
| SoxS | 312-329 | 9.864 |
| TorR | 210-219 | 9.476 |
| NarL | 285-291 | 9.376 |
| AraC | 188-205 | 9.149 |
| MarA | 81-101 | 9.043 |
| LacI | 151-171 | 9.007 |
| GntR | 269-288 | 8.421 |
| MelR | 95-112 | 8.080 |
| RhaS | 340-356 | 7.902 |
| NorR | 7-23 | 7.710 |
| NarP | 173-179 | 6.860 |
| FruR | 170-187 | 6.301 |
| LexA | 9-28 | 6.230 |
| FadR | 78-94 | 6.159 |
| MalT | 188-197 | 6.001 |