| TF name | Position | PWM scan score |
| ArcA | 273-333 | 30.874 |
| OxyR | 247-291 | 21.918 |
| CysB | 342-383 | 21.786 |
| CytR | 165-204 | 21.054 |
| GcvA | 363-391 | 17.825 |
| Fur | 355-369 | 16.695 |
| Fis | 355-375 | 16.555 |
| OmpR | 255-274 | 16.393 |
| SoxS | 215-232 | 15.714 |
| DcuR | 280-334 | 15.530 |
| Rob | 220-240 | 15.048 |
| MarA | 353-373 | 15.017 |
| RcsB | 6-19 | 14.899 |
| AgaR | 287-310 | 14.822 |
| FNR | 301-322 | 14.272 |
| CRP | 352-373 | 14.064 |
| NagC | 340-362 | 13.835 |
| H-NS | 198-212 | 13.751 |
| Nac | 228-242 | 13.745 |
| PhoP | 359-375 | 13.564 |
| ArgR | 367-382 | 13.417 |
| XylR | 194-211 | 13.321 |
| IHF | 9-21 | 12.983 |
| ArgP | 364-376 | 12.975 |
| Lrp | 6-17 | 12.763 |
| UlaR | 332-351 | 12.319 |
| GntR | 256-275 | 12.264 |
| IdnR | 124-139 | 12.178 |
| Mlc | 182-204 | 12.137 |
| PurR | 284-299 | 11.890 |
| TorR | 101-110 | 11.606 |
| GadE | 198-217 | 11.452 |
| FruR | 270-287 | 11.416 |
| ModE | 321-347 | 11.276 |
| MetR | 278-301 | 11.259 |
| TyrR | 250-271 | 10.827 |
| Ada | 241-268 | 10.824 |
| CpxR | 261-275 | 10.699 |
| DeoR | 204-219 | 10.154 |
| GlpR | 365-384 | 9.823 |
| DnaA | 234-242 | 9.731 |
| AraC | 159-176 | 9.604 |
| GalR | 127-142 | 9.600 |
| GalS | 127-142 | 9.600 |
| NarL | 360-366 | 9.580 |
| NorR | 263-279 | 9.137 |
| UxuR | 304-321 | 9.118 |
| MetJ | 236-243 | 8.962 |
| MelR | 249-266 | 8.924 |
| PhoB | 295-314 | 8.388 |
| PspF | 257-273 | 8.093 |
| LacI | 13-33 | 7.550 |
| FhlA | 53-92 | 7.270 |
| NarP | 198-204 | 6.591 |
| NtrC | 267-283 | 5.807 |
| MalT | 141-150 | 5.798 |
| TrpR | 280-297 | 5.785 |
| CaiF | 219-263 | 5.594 |
| RhaS | 116-132 | 5.193 |