| TF name | Position | PWM scan score |
| ArcA | 145-205 | 26.391 |
| OmpR | 169-188 | 19.912 |
| CysB | 145-186 | 19.217 |
| Mlc | 377-399 | 18.946 |
| DcuR | 127-181 | 17.799 |
| AgaR | 164-187 | 17.265 |
| Fur | 166-180 | 17.238 |
| H-NS | 110-124 | 16.643 |
| NagC | 169-191 | 15.580 |
| CytR | 113-152 | 15.395 |
| PhoB | 134-153 | 15.073 |
| GadE | 178-197 | 14.851 |
| CRP | 378-399 | 14.735 |
| UlaR | 30-49 | 14.638 |
| XylR | 168-185 | 14.520 |
| Nac | 296-310 | 13.782 |
| GcvA | 159-187 | 13.213 |
| PhoP | 167-183 | 13.139 |
| ModE | 111-137 | 12.894 |
| ArgP | 181-193 | 12.240 |
| IHF | 141-153 | 12.099 |
| MetJ | 57-64 | 11.889 |
| MarA | 377-397 | 11.623 |
| OxyR | 106-150 | 11.517 |
| Lrp | 114-125 | 11.516 |
| FNR | 363-384 | 11.404 |
| MelR | 139-156 | 11.237 |
| DnaA | 10-18 | 10.950 |
| IdnR | 200-215 | 10.946 |
| CpxR | 108-122 | 10.878 |
| RcsB | 114-127 | 10.498 |
| FruR | 108-125 | 10.244 |
| NtrC | 95-111 | 10.239 |
| GlpR | 174-193 | 10.140 |
| Rob | 120-140 | 9.951 |
| Fis | 378-398 | 9.869 |
| GalS | 282-297 | 9.815 |
| GalR | 282-297 | 9.815 |
| GntR | 108-127 | 9.719 |
| DeoR | 330-345 | 9.717 |
| TyrR | 173-194 | 9.429 |
| RhaS | 361-377 | 9.101 |
| PspF | 169-185 | 8.721 |
| SoxS | 160-177 | 8.707 |
| NarL | 213-219 | 8.545 |
| MetR | 178-201 | 8.301 |
| MalT | 357-366 | 8.024 |
| ArgR | 179-194 | 7.427 |
| LexA | 45-64 | 7.102 |
| TorR | 11-20 | 7.068 |
| PurR | 372-387 | 7.008 |
| FhlA | 222-261 | 6.649 |
| FadR | 109-125 | 6.611 |
| AraC | 3-20 | 6.203 |
| NarP | 200-206 | 6.110 |
| UxuR | 279-296 | 6.106 |