| TF name | Position | PWM scan score |
| ArcA | 227-287 | 26.660 |
| OxyR | 150-194 | 18.899 |
| CysB | 282-323 | 17.893 |
| OmpR | 264-283 | 17.813 |
| CytR | 213-252 | 16.429 |
| FNR | 163-184 | 16.404 |
| GntR | 109-128 | 16.159 |
| AraC | 367-384 | 15.850 |
| PhoB | 236-255 | 15.766 |
| Nac | 359-373 | 15.340 |
| Fur | 272-286 | 15.295 |
| PhoP | 229-245 | 14.772 |
| NagC | 199-221 | 14.076 |
| GadE | 116-135 | 13.941 |
| RcsB | 276-289 | 13.563 |
| ArgP | 280-292 | 13.415 |
| CRP | 189-210 | 13.259 |
| Fis | 168-188 | 12.680 |
| FruR | 342-359 | 12.511 |
| DeoR | 199-214 | 12.484 |
| MetJ | 148-155 | 12.104 |
| ArgR | 171-186 | 11.957 |
| H-NS | 284-298 | 11.859 |
| SoxS | 272-289 | 11.660 |
| UlaR | 185-204 | 11.514 |
| CpxR | 199-213 | 11.475 |
| AgaR | 123-146 | 11.036 |
| IHF | 106-118 | 11.004 |
| TorR | 354-363 | 10.670 |
| Mlc | 278-300 | 10.532 |
| DcuR | 59-113 | 10.453 |
| Lrp | 31-42 | 10.368 |
| LexA | 191-210 | 9.897 |
| GcvA | 244-272 | 9.598 |
| NarL | 280-286 | 9.580 |
| MetR | 177-200 | 9.505 |
| IdnR | 366-381 | 9.489 |
| MarA | 238-258 | 9.316 |
| NtrC | 306-322 | 9.265 |
| ModE | 367-393 | 9.170 |
| DnaA | 365-373 | 9.103 |
| MalT | 331-340 | 9.053 |
| TyrR | 196-217 | 8.947 |
| XylR | 105-122 | 8.617 |
| MelR | 259-276 | 8.410 |
| NarP | 218-224 | 8.372 |
| Ada | 309-336 | 8.178 |
| FhlA | 172-211 | 7.845 |
| NorR | 296-312 | 7.710 |
| PurR | 291-306 | 7.485 |
| Rob | 112-132 | 6.333 |
| PspF | 189-205 | 6.223 |
| GlpR | 108-127 | 6.030 |
| UxuR | 265-282 | 5.888 |
| RhaS | 190-206 | 5.318 |