| TF name | Position | PWM scan score |
| ArcA | 315-375 | 42.943 |
| CysB | 110-151 | 26.324 |
| FNR | 332-353 | 23.215 |
| UxuR | 103-120 | 21.890 |
| AgaR | 340-363 | 21.099 |
| OmpR | 353-372 | 20.991 |
| CytR | 324-363 | 20.754 |
| OxyR | 327-371 | 19.628 |
| Mlc | 225-247 | 17.975 |
| GcvA | 324-352 | 17.944 |
| TyrR | 207-228 | 17.880 |
| UlaR | 112-131 | 17.868 |
| H-NS | 214-228 | 17.019 |
| CpxR | 212-226 | 16.767 |
| PhoB | 231-250 | 16.699 |
| MelR | 253-270 | 16.681 |
| NagC | 48-70 | 16.623 |
| CRP | 329-350 | 16.464 |
| DcuR | 327-381 | 16.376 |
| RcsB | 345-358 | 15.731 |
| PhoP | 56-72 | 15.608 |
| GadE | 331-350 | 14.849 |
| ArgP | 239-251 | 14.789 |
| XylR | 209-226 | 14.604 |
| PspF | 113-129 | 14.422 |
| Nac | 41-55 | 13.355 |
| IHF | 220-232 | 13.298 |
| Rob | 312-332 | 13.193 |
| Fis | 328-348 | 13.158 |
| Fur | 347-361 | 12.648 |
| TorR | 158-167 | 12.480 |
| DeoR | 269-284 | 12.098 |
| ArgR | 340-355 | 11.970 |
| MarA | 326-346 | 11.940 |
| ModE | 342-368 | 11.918 |
| Lrp | 213-224 | 11.142 |
| DnaA | 108-116 | 10.817 |
| AraC | 348-365 | 10.564 |
| Ada | 110-137 | 10.498 |
| IdnR | 200-215 | 10.429 |
| LexA | 295-314 | 10.255 |
| FhlA | 229-268 | 9.961 |
| SoxS | 97-114 | 9.884 |
| FadR | 166-182 | 9.386 |
| NarL | 349-355 | 9.333 |
| NorR | 44-60 | 8.523 |
| MetR | 127-150 | 8.367 |
| GlpR | 326-345 | 7.690 |
| LacI | 225-245 | 7.073 |
| NarP | 176-182 | 6.512 |
| MalT | 198-207 | 6.397 |
| NtrC | 274-290 | 6.350 |
| GntR | 101-120 | 6.039 |
| MetJ | 221-228 | 5.992 |