| TF name | Position | PWM scan score |
| ArcA | 295-355 | 25.863 |
| CysB | 300-341 | 22.568 |
| ModE | 2-28 | 22.118 |
| TyrR | 9-30 | 17.958 |
| OxyR | 277-321 | 17.635 |
| NagC | 298-320 | 16.717 |
| OmpR | 279-298 | 15.867 |
| Fur | 239-253 | 15.663 |
| RcsB | 11-24 | 15.365 |
| H-NS | 329-343 | 15.171 |
| FNR | 2-23 | 15.144 |
| CytR | 294-333 | 15.129 |
| Ada | 276-303 | 14.621 |
| GadE | 14-33 | 14.573 |
| IHF | 290-302 | 14.489 |
| UlaR | 86-105 | 14.433 |
| CRP | 2-23 | 13.339 |
| AgaR | 292-315 | 13.003 |
| Rob | 325-345 | 12.965 |
| DeoR | 122-137 | 12.833 |
| Nac | 9-23 | 12.757 |
| SoxS | 233-250 | 12.730 |
| GcvA | 117-145 | 12.571 |
| Mlc | 7-29 | 12.223 |
| PspF | 115-131 | 12.166 |
| Lrp | 191-202 | 12.113 |
| MarA | 127-147 | 11.708 |
| Fis | 330-350 | 11.706 |
| UxuR | 136-153 | 11.173 |
| PhoP | 1-17 | 10.869 |
| XylR | 9-26 | 10.835 |
| NorR | 377-393 | 10.762 |
| IdnR | 168-183 | 10.543 |
| AraC | 11-28 | 10.482 |
| TorR | 238-247 | 9.826 |
| CpxR | 327-341 | 9.680 |
| NarL | 18-24 | 9.580 |
| NarP | 391-397 | 9.477 |
| GlpR | 211-230 | 9.455 |
| GalS | 341-356 | 9.422 |
| GalR | 341-356 | 9.422 |
| ArgP | 193-205 | 9.302 |
| DnaA | 237-245 | 9.103 |
| PhoB | 116-135 | 8.900 |
| MelR | 277-294 | 8.688 |
| FruR | 123-140 | 8.432 |
| RhaS | 80-96 | 8.192 |
| LacI | 295-315 | 8.161 |
| NtrC | 168-184 | 7.804 |
| ArgR | 314-329 | 7.753 |
| MetR | 237-260 | 7.708 |
| DcuR | 250-304 | 7.626 |
| LexA | 334-353 | 7.626 |
| GntR | 230-249 | 7.080 |
| MetJ | 260-267 | 6.375 |
| FadR | 40-56 | 5.906 |