| TF name | Position | PWM scan score |
| ArcA | 254-314 | 31.948 |
| CysB | 257-298 | 24.522 |
| OmpR | 239-258 | 19.861 |
| NagC | 243-265 | 19.380 |
| PhoB | 124-143 | 19.103 |
| OxyR | 242-286 | 18.692 |
| UxuR | 308-325 | 18.237 |
| CytR | 353-392 | 18.047 |
| Mlc | 152-174 | 16.981 |
| AgaR | 148-171 | 16.485 |
| IHF | 360-372 | 16.400 |
| GlpR | 286-305 | 16.156 |
| GntR | 239-258 | 16.135 |
| GadE | 121-140 | 15.434 |
| GcvA | 108-136 | 15.196 |
| TyrR | 159-180 | 14.664 |
| Fis | 168-188 | 14.372 |
| UlaR | 363-382 | 14.089 |
| ArgR | 252-267 | 14.016 |
| RcsB | 154-167 | 13.916 |
| Nac | 352-366 | 13.743 |
| DcuR | 213-267 | 13.623 |
| DnaA | 370-378 | 13.567 |
| Rob | 54-74 | 13.526 |
| H-NS | 297-311 | 13.308 |
| LacI | 302-322 | 12.952 |
| FNR | 240-261 | 12.874 |
| CRP | 180-201 | 12.767 |
| AraC | 360-377 | 12.378 |
| Lrp | 239-250 | 12.340 |
| PspF | 179-195 | 12.337 |
| IdnR | 381-396 | 12.017 |
| CpxR | 370-384 | 11.993 |
| MarA | 182-202 | 11.881 |
| MetR | 245-268 | 11.552 |
| ArgP | 322-334 | 11.220 |
| SoxS | 282-299 | 10.853 |
| PhoP | 177-193 | 10.830 |
| MelR | 159-176 | 10.718 |
| NorR | 185-201 | 10.601 |
| CaiF | 164-208 | 10.547 |
| LexA | 237-256 | 10.281 |
| GalS | 303-318 | 10.123 |
| GalR | 303-318 | 10.123 |
| ModE | 85-111 | 10.071 |
| Fur | 383-397 | 9.813 |
| DeoR | 245-260 | 9.731 |
| Ada | 200-227 | 9.706 |
| XylR | 349-366 | 9.248 |
| NarL | 355-361 | 8.932 |
| FruR | 131-148 | 8.669 |
| TorR | 259-268 | 8.454 |
| FadR | 216-232 | 8.175 |
| MetJ | 157-164 | 7.082 |
| TrpR | 211-228 | 6.219 |
| FhlA | 239-278 | 5.675 |
| NarP | 86-92 | 5.408 |
| RhaS | 63-79 | 5.358 |