| TF name | Position | PWM scan score |
| ArcA | 335-395 | 19.717 |
| ModE | 251-277 | 16.660 |
| AgaR | 333-356 | 16.523 |
| AraC | 290-307 | 16.185 |
| OxyR | 303-347 | 15.984 |
| Ada | 323-350 | 15.484 |
| FNR | 134-155 | 14.326 |
| TyrR | 310-331 | 13.745 |
| CysB | 315-356 | 13.697 |
| Nac | 373-387 | 13.290 |
| NorR | 307-323 | 12.706 |
| CRP | 326-347 | 12.500 |
| OmpR | 336-355 | 12.205 |
| MetJ | 359-366 | 12.104 |
| SoxS | 64-81 | 11.675 |
| IHF | 5-17 | 11.641 |
| FhlA | 308-347 | 11.431 |
| UlaR | 359-378 | 11.350 |
| NagC | 349-371 | 11.343 |
| XylR | 370-387 | 11.142 |
| TorR | 349-358 | 11.140 |
| DeoR | 52-67 | 10.692 |
| MetR | 315-338 | 10.689 |
| GadE | 313-332 | 10.456 |
| TrpR | 316-333 | 10.366 |
| Rob | 56-76 | 10.302 |
| Lrp | 7-18 | 10.134 |
| Fis | 374-394 | 9.942 |
| FruR | 135-152 | 9.910 |
| LacI | 340-360 | 9.494 |
| GcvA | 7-35 | 9.335 |
| DnaA | 344-352 | 9.246 |
| CytR | 7-46 | 9.123 |
| PhoP | 177-193 | 8.812 |
| H-NS | 344-358 | 8.535 |
| MelR | 33-50 | 8.295 |
| RcsB | 332-345 | 8.235 |
| ArgP | 315-327 | 8.227 |
| UxuR | 118-135 | 8.218 |
| IdnR | 63-78 | 7.904 |
| Mlc | 115-137 | 7.677 |
| ArgR | 310-325 | 7.494 |
| NarL | 67-73 | 7.438 |
| GlpR | 154-173 | 7.436 |
| MarA | 62-82 | 7.356 |
| LexA | 298-317 | 7.205 |
| NtrC | 49-65 | 7.062 |
| CpxR | 306-320 | 7.027 |
| PhoB | 136-155 | 6.839 |
| PspF | 277-293 | 6.609 |
| MalT | 155-164 | 6.339 |
| FadR | 3-19 | 5.523 |
| RhaS | 281-297 | 5.373 |
| Fur | 107-121 | 5.089 |
| GntR | 48-67 | 5.025 |