| TF name | Position | PWM scan score |
| ArcA | 334-394 | 43.025 |
| OxyR | 332-376 | 27.521 |
| Fur | 369-383 | 26.238 |
| CysB | 338-379 | 24.430 |
| CytR | 342-381 | 22.475 |
| DcuR | 331-385 | 20.902 |
| GntR | 165-184 | 19.430 |
| AgaR | 339-362 | 19.150 |
| CRP | 309-330 | 19.133 |
| PhoP | 365-381 | 19.020 |
| GadE | 321-340 | 18.634 |
| Mlc | 351-373 | 17.889 |
| FNR | 349-370 | 17.351 |
| DeoR | 163-178 | 16.808 |
| OmpR | 163-182 | 16.266 |
| Fis | 159-179 | 15.895 |
| ModE | 154-180 | 15.879 |
| H-NS | 165-179 | 15.865 |
| PhoB | 299-318 | 15.740 |
| IHF | 162-174 | 15.384 |
| NagC | 349-371 | 15.333 |
| UlaR | 371-390 | 15.295 |
| GcvA | 368-396 | 15.266 |
| Nac | 275-289 | 15.055 |
| ArgP | 353-365 | 14.789 |
| RcsB | 378-391 | 14.629 |
| ArgR | 371-386 | 14.458 |
| Rob | 366-386 | 13.397 |
| IdnR | 174-189 | 13.229 |
| MetR | 329-352 | 13.074 |
| Lrp | 343-354 | 12.237 |
| Ada | 193-220 | 12.207 |
| CpxR | 162-176 | 12.157 |
| TorR | 162-171 | 11.647 |
| MarA | 310-330 | 11.566 |
| TyrR | 161-182 | 11.471 |
| NorR | 164-180 | 11.370 |
| XylR | 343-360 | 11.203 |
| GlpR | 267-286 | 11.031 |
| SoxS | 168-185 | 10.913 |
| AraC | 338-355 | 10.764 |
| PspF | 287-303 | 10.336 |
| NarL | 348-354 | 9.580 |
| DnaA | 381-389 | 8.160 |
| FadR | 266-282 | 7.518 |
| GalS | 115-130 | 7.506 |
| GalR | 115-130 | 7.506 |
| NarP | 174-180 | 7.423 |
| NtrC | 210-226 | 7.255 |
| MelR | 369-386 | 6.932 |
| MalT | 82-91 | 6.611 |
| FruR | 279-296 | 6.564 |
| LexA | 40-59 | 6.048 |
| PurR | 305-320 | 5.993 |
| FhlA | 57-96 | 5.989 |
| UxuR | 242-259 | 5.737 |
| MetJ | 355-362 | 5.609 |
| TrpR | 340-357 | 5.587 |
| LacI | 310-330 | 5.042 |