| TF name | Position | PWM scan score |
| ArcA | 336-396 | 20.142 |
| Mlc | 59-81 | 17.357 |
| MarA | 156-176 | 15.929 |
| CysB | 237-278 | 14.749 |
| FNR | 296-317 | 14.552 |
| TyrR | 327-348 | 13.972 |
| Fur | 237-251 | 13.843 |
| OmpR | 332-351 | 13.538 |
| Nac | 235-249 | 13.527 |
| ArgR | 192-207 | 13.419 |
| H-NS | 345-359 | 12.930 |
| CytR | 222-261 | 12.863 |
| OxyR | 226-270 | 12.807 |
| IHF | 243-255 | 12.666 |
| LacI | 194-214 | 12.217 |
| Fis | 348-368 | 11.436 |
| IdnR | 289-304 | 11.275 |
| SoxS | 350-367 | 11.204 |
| TorR | 117-126 | 11.108 |
| PspF | 137-153 | 10.628 |
| CRP | 246-267 | 10.344 |
| Lrp | 354-365 | 10.184 |
| FhlA | 179-218 | 10.116 |
| ArgP | 24-36 | 9.886 |
| MelR | 348-365 | 9.846 |
| PhoB | 12-31 | 9.755 |
| MetR | 280-303 | 9.722 |
| GlpR | 248-267 | 9.699 |
| MalT | 267-276 | 9.637 |
| Ada | 176-203 | 9.615 |
| UxuR | 324-341 | 9.400 |
| AgaR | 8-31 | 9.330 |
| Rob | 250-270 | 9.280 |
| FruR | 240-257 | 9.177 |
| NarL | 88-94 | 8.932 |
| UlaR | 18-37 | 8.797 |
| GcvA | 211-239 | 8.704 |
| GadE | 70-89 | 8.608 |
| AraC | 72-89 | 8.573 |
| DcuR | 229-283 | 8.442 |
| CueR | 256-274 | 8.397 |
| MetJ | 186-193 | 8.331 |
| XylR | 5-22 | 8.189 |
| NorR | 272-288 | 7.623 |
| DnaA | 74-82 | 7.406 |
| PhoP | 301-317 | 7.352 |
| CaiF | 338-382 | 7.301 |
| ModE | 69-95 | 7.192 |
| NagC | 149-171 | 7.090 |
| DeoR | 196-211 | 6.964 |
| CpxR | 188-202 | 6.952 |
| RcsB | 177-190 | 6.864 |
| FadR | 367-383 | 6.861 |
| NarP | 243-249 | 6.794 |
| PurR | 329-344 | 5.536 |
| NtrC | 261-277 | 5.188 |