| TF name | Position | PWM scan score |
| ArcA | 246-306 | 24.431 |
| IdnR | 263-278 | 17.896 |
| OmpR | 246-265 | 17.603 |
| GcvA | 266-294 | 17.052 |
| CysB | 246-287 | 16.503 |
| XylR | 70-87 | 16.253 |
| AgaR | 86-109 | 15.511 |
| PhoB | 97-116 | 15.212 |
| PhoP | 268-284 | 15.157 |
| DcuR | 55-109 | 14.841 |
| H-NS | 271-285 | 14.564 |
| FNR | 138-159 | 14.542 |
| GntR | 255-274 | 14.284 |
| MelR | 240-257 | 13.323 |
| Mlc | 251-273 | 12.966 |
| CRP | 74-95 | 12.482 |
| CytR | 74-113 | 12.464 |
| Fis | 274-294 | 12.290 |
| OxyR | 60-104 | 12.232 |
| PspF | 74-90 | 12.206 |
| CpxR | 126-140 | 11.948 |
| RcsB | 91-104 | 11.744 |
| UlaR | 96-115 | 11.601 |
| Lrp | 248-259 | 11.538 |
| NagC | 60-82 | 11.468 |
| Nac | 193-207 | 11.439 |
| GlpR | 5-24 | 10.947 |
| MetR | 165-188 | 10.643 |
| ModE | 108-134 | 10.609 |
| DeoR | 39-54 | 10.380 |
| IHF | 339-351 | 10.357 |
| ArgR | 100-115 | 9.650 |
| GadE | 128-147 | 9.540 |
| Ada | 56-83 | 9.434 |
| NorR | 278-294 | 9.429 |
| RhaS | 369-385 | 9.278 |
| NarL | 95-101 | 9.240 |
| DnaA | 79-87 | 9.041 |
| Rob | 244-264 | 8.676 |
| ArgP | 41-53 | 8.674 |
| TorR | 38-47 | 8.656 |
| SoxS | 247-264 | 8.511 |
| AraC | 208-225 | 8.145 |
| FruR | 52-69 | 8.099 |
| TyrR | 250-271 | 7.473 |
| UxuR | 274-291 | 7.446 |
| MetJ | 144-151 | 7.386 |
| CueR | 289-307 | 6.896 |
| MalT | 261-270 | 6.816 |
| Fur | 195-209 | 6.812 |
| NarP | 204-210 | 6.794 |
| MarA | 243-263 | 6.643 |
| GalR | 25-40 | 5.680 |
| GalS | 25-40 | 5.680 |
| FhlA | 69-108 | 5.454 |